Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1232 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCTTCTACTAATTTCCACCTCCACAACCCTTTTTTCCCTTCCTCTTCAAACCCTCCTCCCAATTTCCTCCACGCGCCGCCCCCGTCCTCTCCGCCGCTCCGACAAGCCCTCCCCCTCCTCCGCCTCAGCCCGACTAGACCCTCTCGCCCTTCCGCCATGGAAATCGACAACAAGAACCCCGAAACCGACGACGTCTCCGTCACGGTTGCACTCCACATAGGGCTTCCAAGCCCTAGTGCCTCAGAATTGGCAAGGCTTTTGGTGGCTGATAATAACAATGAAAATGAGGAAGAAGATCCATTGATGGAAGAAGATCAATTGGAATTAGAGGATGAAGATGTTGCAATTCCTGGATTTTCTTTTAGTAGACTCAACAAAGGACAGTATTGGATTCCAACTCCTTCACAGATCCTCATTGGTCCTACTCAGTTTTCTTGTCCTGTTTGTTTCAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCACGGGTCGCAATACAGGCGAGGACCAGAGTCGTTAAGAGGCACGCAGCCAACCGGGATGCTCCGGCTACCATGCTACTGCTGCTCACCGGGGTGTCGAAACAACATCGACCATCCGAGAGCGAAACCGTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGAATCAAGCCATTCATGTGTAGAAAATGTGGGAAAGCCTTTGCTGTGAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATAATAATAATAATAATAATAATAATATTATTAATAATACCAATACTAATATTATTAATGATAATGGTGATCATAATCACAATTATCTTCATCTTCATGGATTTGATGAGGAGGATGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1056 44.98 MDDPSTNFFTNLFKFNSPSTNFHLHNPFFPSSSNPPPNFLHAPPPSSPPLRQALPLLRLSPTRPSRPSAMEIDNKNPETDDVSVTVALHIGLPSPSASELARLLVADNNNENEEEDPLMEEDQLELEDEDVAIPGFSFSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHNNNNNNNNIINNTNTNIINDNGDHNHNYLHLHGFDEEDEPAYSEVEQDHD 351
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 8757416 8759774 - Sed0014851.1 Sed12g1232 732188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1232 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Sed12g1232 351 SMART c2h2final6 161 183 IPR013087 -
Sed12g1232 351 SMART c2h2final6 245 265 IPR013087 -
Sed12g1232 351 SUPERFAMILY beta-beta-alpha zinc fingers 152 183 IPR036236 -
Sed12g1232 351 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Sed12g1232 351 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 244 268 - -
Sed12g1232 351 SUPERFAMILY beta-beta-alpha zinc fingers 227 265 IPR036236 -
Sed12g1232 351 Gene3D Classic Zinc Finger 160 183 - -
Sed12g1232 351 FunFam zinc finger protein WIP2-like 160 183 - -
Sed12g1232 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 265 IPR013087 -
Sed12g1232 351 PANTHER ZINC FINGER PROTEIN WIP2 32 310 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed12g1232 351 FunFam Zinc finger protein WIP2 214 296 - -
Sed12g1232 351 Gene3D Classic Zinc Finger 223 302 - -
Sed12g1232 351 Pfam Zinc finger, C2H2 type 161 180 IPR013087 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1891 Sed-Chr3:12862451 Sed12g1232 Sed-Chr12:8757416 2.10E-85 dispersed
Sed05g1132 Sed-Chr5:11349122 Sed12g1232 Sed-Chr12:8757416 4.80E-97 dispersed
Sed07g0666 Sed-Chr7:4992851 Sed12g1232 Sed-Chr12:8757416 1.00E-91 dispersed
Sed11g1595 Sed-Chr11:31452639 Sed12g1232 Sed-Chr12:8757416 2.40E-82 dispersed
Sed12g1232 Sed-Chr12:8757416 Sed14g0195 Sed-Chr14:2209686 2.90E-107 dispersed
Sed12g1232 Sed-Chr12:8757416 Sed01g3304 Sed-Chr1:61376072 7.20E-98 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40195 None None None None Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1232 - - - 0.0