Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1232 | ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCTTCTACTAATTTCCACCTCCACAACCCTTTTTTCCCTTCCTCTTCAAACCCTCCTCCCAATTTCCTCCACGCGCCGCCCCCGTCCTCTCCGCCGCTCCGACAAGCCCTCCCCCTCCTCCGCCTCAGCCCGACTAGACCCTCTCGCCCTTCCGCCATGGAAATCGACAACAAGAACCCCGAAACCGACGACGTCTCCGTCACGGTTGCACTCCACATAGGGCTTCCAAGCCCTAGTGCCTCAGAATTGGCAAGGCTTTTGGTGGCTGATAATAACAATGAAAATGAGGAAGAAGATCCATTGATGGAAGAAGATCAATTGGAATTAGAGGATGAAGATGTTGCAATTCCTGGATTTTCTTTTAGTAGACTCAACAAAGGACAGTATTGGATTCCAACTCCTTCACAGATCCTCATTGGTCCTACTCAGTTTTCTTGTCCTGTTTGTTTCAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCACGGGTCGCAATACAGGCGAGGACCAGAGTCGTTAAGAGGCACGCAGCCAACCGGGATGCTCCGGCTACCATGCTACTGCTGCTCACCGGGGTGTCGAAACAACATCGACCATCCGAGAGCGAAACCGTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGAATCAAGCCATTCATGTGTAGAAAATGTGGGAAAGCCTTTGCTGTGAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATAATAATAATAATAATAATAATAATATTATTAATAATACCAATACTAATATTATTAATGATAATGGTGATCATAATCACAATTATCTTCATCTTCATGGATTTGATGAGGAGGATGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA | 1056 | 44.98 | MDDPSTNFFTNLFKFNSPSTNFHLHNPFFPSSSNPPPNFLHAPPPSSPPLRQALPLLRLSPTRPSRPSAMEIDNKNPETDDVSVTVALHIGLPSPSASELARLLVADNNNENEEEDPLMEEDQLELEDEDVAIPGFSFSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHNNNNNNNNIINNTNTNIINDNGDHNHNYLHLHGFDEEDEPAYSEVEQDHD | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8757416 | 8759774 | - | Sed0014851.1 | Sed12g1232 | 732188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1232 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 161 | 188 | IPR013087 | - | |
Sed12g1232 | 351 | SMART | c2h2final6 | 161 | 183 | IPR013087 | - | |
Sed12g1232 | 351 | SMART | c2h2final6 | 245 | 265 | IPR013087 | - | |
Sed12g1232 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 152 | 183 | IPR036236 | - | |
Sed12g1232 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 163 | 183 | IPR013087 | - | |
Sed12g1232 | 351 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 244 | 268 | - | - | |
Sed12g1232 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 227 | 265 | IPR036236 | - | |
Sed12g1232 | 351 | Gene3D | Classic Zinc Finger | 160 | 183 | - | - | |
Sed12g1232 | 351 | FunFam | zinc finger protein WIP2-like | 160 | 183 | - | - | |
Sed12g1232 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 245 | 265 | IPR013087 | - | |
Sed12g1232 | 351 | PANTHER | ZINC FINGER PROTEIN WIP2 | 32 | 310 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Sed12g1232 | 351 | FunFam | Zinc finger protein WIP2 | 214 | 296 | - | - | |
Sed12g1232 | 351 | Gene3D | Classic Zinc Finger | 223 | 302 | - | - | |
Sed12g1232 | 351 | Pfam | Zinc finger, C2H2 type | 161 | 180 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1891 | Sed-Chr3:12862451 | Sed12g1232 | Sed-Chr12:8757416 | 2.10E-85 | dispersed | |
Sed05g1132 | Sed-Chr5:11349122 | Sed12g1232 | Sed-Chr12:8757416 | 4.80E-97 | dispersed | |
Sed07g0666 | Sed-Chr7:4992851 | Sed12g1232 | Sed-Chr12:8757416 | 1.00E-91 | dispersed | |
Sed11g1595 | Sed-Chr11:31452639 | Sed12g1232 | Sed-Chr12:8757416 | 2.40E-82 | dispersed | |
Sed12g1232 | Sed-Chr12:8757416 | Sed14g0195 | Sed-Chr14:2209686 | 2.90E-107 | dispersed | |
Sed12g1232 | Sed-Chr12:8757416 | Sed01g3304 | Sed-Chr1:61376072 | 7.20E-98 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40195 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1232 | - | - | - | 0.0 |