Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1240 ATGGAGGTTAAAGCAGGAACTGTAAGTGGATCGGAAGATACTGGGCTCGAATCGCTTCGATTCCGCGAAGAAATTCAAGGGTTGATGACGATTCCGGCGGAGAATGGTAGCTCCTTCACGGCGCTTCTGGAACTTCCGGCGACGCAGGCTTTGGAGATCCTCCACTCGCCGGATTCCGACGGTGGAGCGACGGCGGCGGCGGTTGTGACCGATGATTCCGTTCATCGCCGTTCGCAACCCTACTTCAGCGCGTTCGATTGCAATTTGATGTTCCCGATGAACTCTGCCCTAATCGAACGCGCCGCCAAGTTCGAGCACTCGCCGGAGACGACGAGTTCAGTGCCGTTGAATTTGGAGAAAGTGAAGAACGAGCTCAACGCCCAAACCGATTCGAACCCTAATCTCTTACAGACTTTGATTTCCGATCCGACGGTGGAGAACAACACGAATCAGAGATCGGCGAAGAGGAAGGAACGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAAGATGCTGAAATGCTTCCATATGTTCATGTTCGAGCTCGCCGTGGACAAGCTACAGACAGCCATAGCTTAGCAGAGCGAGCAAGGAGAGAGAAGATTAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCGCTGCAACGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCTGTACCCGAAAGCAACTTCCCGAACATGGTTACACCATTGATGTGGCCCGAAATTGGAAACAAACAACAATATCAACCGCAATGGCAATTCGATGCAGTAGTTAACCCGCAAGCCTGGACGAGGGATGAACATAATCATCATAATTTCAGCGCTCCTGAAAACTCTCTTCGAAGTTACGGCTCTTCAGTAAATTCAGCATCTCTGCACTTAAATCAATTGAAGATGGAGCTGTGA 1047 49.09 MEVKAGTVSGSEDTGLESLRFREEIQGLMTIPAENGSSFTALLELPATQALEILHSPDSDGGATAAAVVTDDSVHRRSQPYFSAFDCNLMFPMNSALIERAAKFEHSPETTSSVPLNLEKVKNELNAQTDSNPNLLQTLISDPTVENNTNQRSAKRKEREKKGKGSSKKSKNEDAEMLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVPESNFPNMVTPLMWPEIGNKQQYQPQWQFDAVVNPQAWTRDEHNHHNFSAPENSLRSYGSSVNSASLHLNQLKMEL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8862834 8869215 - Sed0003534.1 Sed12g1240 732196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1240 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 258 IPR036638 GO:0046983(InterPro)
Sed12g1240 348 SMART finulus 195 245 IPR011598 GO:0046983(InterPro)
Sed12g1240 348 MobiDBLite consensus disorder prediction 126 178 - -
Sed12g1240 348 Coils Coil 229 249 - -
Sed12g1240 348 CDD bHLH_AtBPE_like 179 264 - -
Sed12g1240 348 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 296 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed12g1240 348 Gene3D - 186 259 IPR036638 GO:0046983(InterPro)
Sed12g1240 348 FunFam transcription factor bHLH48-like isoform X1 186 258 - -
Sed12g1240 348 Pfam Helix-loop-helix DNA-binding domain 193 240 IPR011598 GO:0046983(InterPro)
Sed12g1240 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 239 IPR011598 GO:0046983(InterPro)
Sed12g1240 348 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1240 Sed-Chr12:8862834 Sed13g1831 Sed-Chr13:23247158 5.70E-31 dispersed
Sed12g1240 Sed-Chr12:8862834 Sed02g0327 Sed-Chr2:39585589 3.20E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40196 PF00010 HLH 1.30E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1240 - - - 0.0