Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1245 ATGGCAGATTCCGAGGATATTCAACCTCTCGTTTGTGATAATGGAACTGGGATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAAGATGCCTACGTTGGCGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATACCCCATTGAGCATGGAATTGTTAGTAACTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACTGAAGCACCATTGAATCCCAAGGCGAACAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGCATCGTTATGGATTCTGGTGATGGTGTTAGCCACACAGTTCCAATCTATGAAGGTTATGCTCTCCCACATGCCATCCTGCGTCTCGACCTGGCCGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTAACTGAACGTGGCTACTCTTTCACCACCTCTGCTGAACGTGAGATTGTGAGAGATATGAAGGAGAAGCTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGGCATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGCGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAACCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAACTCTATCATGAAGTGCGATGTCGATATTAGAAAGGATCTGTATGGCAATATCGTCCTCAGTGGCGGTTCGACCATGTTCACTGGCATTGGTGACAGGATGAGCAAGGAGATCACCGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCTATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCGTCAATTGTGCACAGGAAATGCTTCTAA 1134 46.91 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELEASKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8902651 8907880 + Sed0009346.1 Sed12g1245 732201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1245 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed12g1245 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed12g1245 377 FunFam Actin, muscle 182 273 - -
Sed12g1245 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Sed12g1245 377 Gene3D - 10 371 - -
Sed12g1245 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed12g1245 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed12g1245 377 Pfam Actin 5 377 IPR004000 -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 255 329 - -
Sed12g1245 377 Gene3D - 140 340 - -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 330 377 - -
Sed12g1245 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 3 155 - -
Sed12g1245 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Sed12g1245 377 PRINTS Actin signature 51 62 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 238 254 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 63 85 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 28 37 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 117 130 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 142 161 IPR004000 -
Sed12g1245 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Sed12g1245 377 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3008 Sed-Chr3:46890130 Sed12g1245 Sed-Chr12:8902651 1.00E-214 dispersed
Sed07g2481 Sed-Chr7:40527906 Sed12g1245 Sed-Chr12:8902651 3.50E-215 dispersed
Sed07g2482 Sed-Chr7:40527906 Sed12g1245 Sed-Chr12:8902651 3.50E-215 dispersed
Sed10g0485 Sed-Chr10:3084451 Sed12g1245 Sed-Chr12:8902651 1.60E-212 dispersed
Sed10g1808 Sed-Chr10:35137400 Sed12g1245 Sed-Chr12:8902651 4.80E-209 dispersed
Sed11g2283 Sed-Chr11:35991665 Sed12g1245 Sed-Chr12:8902651 1.00E-71 dispersed
Sed11g2284 Sed-Chr11:35991665 Sed12g1245 Sed-Chr12:8902651 1.80E-78 dispersed
Sed12g1245 Sed-Chr12:8902651 Sed12g2064 Sed-Chr12:31429881 1.20E-74 dispersed
Sed14g0483 Sed-Chr14:4811076 Sed12g1245 Sed-Chr12:8902651 1.90E-83 transposed
Sed12g1245 Sed-Chr12:8902651 Sed02g0367 Sed-Chr2:40502792 3.10E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1245 K10355 - csv:101221679 748.429