Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1245 ATGGCAGATTCCGAGGATATTCAACCTCTCGTTTGTGATAATGGAACTGGGATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAAGATGCCTACGTTGGCGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATACCCCATTGAGCATGGAATTGTTAGTAACTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACTGAAGCACCATTGAATCCCAAGGCGAACAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGCATCGTTATGGATTCTGGTGATGGTGTTAGCCACACAGTTCCAATCTATGAAGGTTATGCTCTCCCACATGCCATCCTGCGTCTCGACCTGGCCGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTAACTGAACGTGGCTACTCTTTCACCACCTCTGCTGAACGTGAGATTGTGAGAGATATGAAGGAGAAGCTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGGCATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGCGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAACCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAACTCTATCATGAAGTGCGATGTCGATATTAGAAAGGATCTGTATGGCAATATCGTCCTCAGTGGCGGTTCGACCATGTTCACTGGCATTGGTGACAGGATGAGCAAGGAGATCACCGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCTATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCGTCAATTGTGCACAGGAAATGCTTCTAA 1134 46.91 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELEASKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8902651 8907880 + Sed0009346.1 Sed12g1245 732201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1245 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed12g1245 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed12g1245 377 FunFam Actin, muscle 182 273 - -
Sed12g1245 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Sed12g1245 377 Gene3D - 10 371 - -
Sed12g1245 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed12g1245 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed12g1245 377 Pfam Actin 5 377 IPR004000 -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 255 329 - -
Sed12g1245 377 Gene3D - 140 340 - -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 330 377 - -
Sed12g1245 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed12g1245 377 FunFam Actin, alpha skeletal muscle 3 155 - -
Sed12g1245 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Sed12g1245 377 PRINTS Actin signature 51 62 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 238 254 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 63 85 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 28 37 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 117 130 IPR004000 -
Sed12g1245 377 PRINTS Actin signature 142 161 IPR004000 -
Sed12g1245 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Sed12g1245 377 SMART actin_3 7 377 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1245 K10355 - - csv:101221679 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3008 Sed-Chr3:46890130 Sed12g1245 Sed-Chr12:8902651 1.00E-214 dispersed
Sed07g2481 Sed-Chr7:40527906 Sed12g1245 Sed-Chr12:8902651 3.50E-215 dispersed
Sed07g2482 Sed-Chr7:40527906 Sed12g1245 Sed-Chr12:8902651 3.50E-215 dispersed
Sed10g0485 Sed-Chr10:3084451 Sed12g1245 Sed-Chr12:8902651 1.60E-212 dispersed
Sed10g1808 Sed-Chr10:35137400 Sed12g1245 Sed-Chr12:8902651 4.80E-209 dispersed
Sed11g2283 Sed-Chr11:35991665 Sed12g1245 Sed-Chr12:8902651 1.00E-71 dispersed
Sed11g2284 Sed-Chr11:35991665 Sed12g1245 Sed-Chr12:8902651 1.80E-78 dispersed
Sed12g1245 Sed-Chr12:8902651 Sed12g2064 Sed-Chr12:31429881 1.20E-74 dispersed
Sed14g0483 Sed-Chr14:4811076 Sed12g1245 Sed-Chr12:8902651 1.90E-83 transposed
Sed12g1245 Sed-Chr12:8902651 Sed02g0367 Sed-Chr2:40502792 3.10E-216 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 9.4e-213 736.9
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.2e-212 736.5
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 1.2e-212 736.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.6e-212 736.1
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.1e-212 735.7
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.6e-212 734.9
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 6.1e-212 734.2
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 8.0e-212 733.8
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT2G37620 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT2G37620 99.2 8.9e-70 261.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 6.5e-214 740.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.9e-213 739.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.2e-213 738.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 736.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 2.7e-212 735.3
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G59370 95.5 6.1e-212 734.2
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 4.4e-210 728.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-209 726.5
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G59370 92.1 2.5e-80 297.0
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G59370 97.6 4.4e-69 259.6
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.9e-214 741.9
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 8.5e-214 740.3
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.2e-213 737.3
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-212 736.5
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 2.7e-212 735.3
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.0e-210 729.2
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.7e-210 727.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 7.5e-210 727.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G46520 92.7 1.1e-80 298.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G46520 97.6 4.4e-69 259.6
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 7.7e-215 743.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 743.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.1e-213 740.0
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 738.4
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 4.2e-213 738.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 735.7
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.7e-212 735.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 4.7e-212 734.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 6.1e-212 734.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G12110 90.9 5.6e-80 295.8
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G12110 98.4 2.0e-69 260.8
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-208 722.2
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.1e-208 721.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 9.1e-208 720.3
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 719.5
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.7e-207 718.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 4.5e-207 718.0
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.0e-206 716.8
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.7e-206 716.1
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G18780 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G18780 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 8.3e-209 723.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.4e-208 723.0
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 3.1e-208 721.8
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.1e-208 721.5
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 721.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 9.1e-208 720.3
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.6e-207 719.5
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.5e-207 718.4
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 5.9e-207 717.6
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT1G49240 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT1G49240 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 4.1e-216 748.0
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 6.5e-214 740.7
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 1.5e-213 739.6
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.6e-212 736.1
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.1e-212 735.7
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 3.6e-212 734.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 6.1e-212 734.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.2e-211 731.1
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G09810 94.4 3.4e-210 728.4
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G09810 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G09810 98.4 2.6e-69 260.4
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT2G19760 80.2 2.2e-60 229.2
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 4.6e-58 221.5
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.3e-55 213.4
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 9.1e-54 207.2
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 7.7e-53 204.1
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.5e-59 224.6
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.0e-57 218.8
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 4.8e-55 211.5
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 5.3e-54 208.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.2e-52 202.6
Sed11g0036 . 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 152.1
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 9.0e-57 217.2
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 1.2e-56 216.9
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29340 72.4 1.7e-55 213.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 7.9e-53 204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276