Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1246 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCGCTGAGACAGTATGCCCGTATGAACAAGGATGATGATGAAGATTCTTCTTTAGAGGACCCTTTGCTGTGGAGCACTGACCTTGGAAAGCACTCTTATGGGGATTTCTCTTTCGCTGTGGTTCAGGCCAATGAGGTAATTGAGGATTGTAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCCTTGGAGTTTATGATGGCCATGGCGGCCCTGATGCTTCTCGATTTATATGTGATCATCTTTTCAAGAATCTGATTAGGCTTGCTCAAGAGAATGGAAACATTACTGAAGGTATCATCCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTATTACTCTTGTTCGTCGCTCATGGGGAATAAAGCCAACAATTGCAGCTGTGGGATCTTGTTGCCTGGTGGGTGTTATCTGGAGAGGTACATTGTACATCGGGAACGTCGGTGATTCCCGTGCTGTCATTGGTTCTCTAGGTAGATCTAATAAGATAGTTGCCGAACAGTTGACAAGGGATCACAATGCAAGTATTGAGGAGGTTAGACAAGAACTCAGGGCCTTGCATCCCGATGACTCGCATATCGTTGTTATGAAGAACGGAGTGTGGCGTATAAAAGGCATAATTCAGGTTTCGAGATCGATAGGTGATGTATATTTGAAAAGGTCAGAGTTCTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACTGCTGAACCATCGCTAAGTAAAAGAGTTCTAAAACCCAATGACAAATTTCTCATATTTGGATCTGATGGCCTTTGGGAGCAACTATCAAATCAACAAGCTGTCGAAATTGTTTATAATAATCCACGAGCAAGAATTGCAAAAAGACTTATCAAAACAGCATTAACCGAGGCTGCAAGGAAGAGGCAGATGAGATACGATGATCTCAAGAAGCTCGAGAAAGGCGTACGACGGTACTTTCACGATGATATCACAGTCATTGTCATCTTTCTGGATGATTTGCAAGGGAAGAAGGCACTTGTACCTGAATTATCTGTTCGTGGGTTCAGTGACATCGTAGGACCGTCGAATTTCAACGTTCTTCGGGGCATCGATTAG 1149 44.73 MFSWLARMASACWKPLRQYARMNKDDDEDSSLEDPLLWSTDLGKHSYGDFSFAVVQANEVIEDCSQVETGPDATFLGVYDGHGGPDASRFICDHLFKNLIRLAQENGNITEGIIRSAFSATEEGFITLVRRSWGIKPTIAAVGSCCLVGVIWRGTLYIGNVGDSRAVIGSLGRSNKIVAEQLTRDHNASIEEVRQELRALHPDDSHIVVMKNGVWRIKGIIQVSRSIGDVYLKRSEFSLDPSFPRFHLAEPLRRPVLTAEPSLSKRVLKPNDKFLIFGSDGLWEQLSNQQAVEIVYNNPRARIAKRLIKTALTEAARKRQMRYDDLKKLEKGVRRYFHDDITVIVIFLDDLQGKKALVPELSVRGFSDIVGPSNFNVLRGID 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8908618 8912485 - Sed0011502.1 Sed12g1246 732202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1246 382 Gene3D - 36 355 IPR036457 -
Sed12g1246 382 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Sed12g1246 382 Pfam Protein phosphatase 2C 71 317 IPR001932 -
Sed12g1246 382 SMART PP2C_4 29 346 IPR001932 -
Sed12g1246 382 FunFam Probable protein phosphatase 2C 42 40 356 - -
Sed12g1246 382 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Sed12g1246 382 CDD PP2Cc 47 348 IPR001932 -
Sed12g1246 382 PANTHER PROTEIN PHOSPHATASE 43 347 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed12g1246 382 SUPERFAMILY PP2C-like 53 351 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1967 Sed-Chr10:36360296 Sed12g1246 Sed-Chr12:8908618 1.20E-111 dispersed
Sed10g1968 Sed-Chr10:36360296 Sed12g1246 Sed-Chr12:8908618 2.90E-90 dispersed
Sed12g1246 Sed-Chr12:8908618 Sed14g1221 Sed-Chr14:21410055 1.10E-107 dispersed
Sed12g1246 Sed-Chr12:8908618 Sed02g0366 Sed-Chr2:40498529 9.30E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1246 K01102 - csv:101222146 685.256