Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1248 ATGGAAATTGAGTCACAGAAGAATCTCCAGCGCAAGCAGTGTAGCTATGGAATTTGGGATGAGCAGTACAAGGTGGAGAAGGAGACGTACAAGGGCCAGCAATACAGCCACATTTACTTTGCTCGACTCCACTTCATGAGAACATTGCTCCGTTCACTTGTCTCTAACTGGAACCCTCATTTGCCTGTTTGTACTGTTCTGGGATTGGAAGAAGGCAAGGAATGTATTATTGTTGGAACCCTCTACAAGCACATGAAGCTTAAACCTACCGTTCTGGATGAGTATGCAAAGGAGAGATCTGCCACTCCACTTGTTAAGCCACATAACTTTATGCACCCAGATGATCATCTAGTTTTGGAAGATGAAAGTGGGAGAGTCAAGCTTTCTGGGGCTGTGCTCATACCTTCTGTATACGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCCGACTTGCCACCTCAGATACCGCGGCTCCTCATATCAAGTGAAGACAAGTATGTGGTTTTCGTGTCGGGCCTAAGTATTGGGAGTGGCATCTCTAATCCTCTACAGTTCCAGCTCCTTATTGATCATATAACAGGACATTTAGGGGATGAAAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCTGTTGAAATTTCTCGTGCACTTTTAAATGGGCAGCATTTGTCTGCAAAAGACCAAACAAAGCTGATAGAACCGCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGATATCATGCCAGGTTCCAGTGACCCGGCCAATTTTTCCTTGCCTCAGCAGCCTTTGCACAGATGCCTTTTTCCTGGATCATCAGCCTATAATACTTTCAGATCTGCCACTAACCCTCATTGTTTTGAGCTCGATAATTTCAGGTTTCTTGGTACTTCAGGTCAGAACATAGATGATCTCGAGAAGTACTCAGAGGCTAAGGATAAGCTTGAATTTATGGAGAGGACATTGAGATGGAGGCATCTAGCACCAACTGCTCCAAACACTCTTGGTTGCTATCCTTTCTCTGATCGAGACCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTATTGGCAACCAGGACAAGTTCGATACTCGCTTAATAAAGGGACCTGAAGGGCAGATGGTAAGACTCATTTCGATTCCACGATTTTGCGAAAAGGGAGTTGCTGTAATGCTTAACTTGAGAAATCTTGAATGTCACACTCTGAGTTTCGGAACTGAATTCTGCTGA 1317 43.81 MEIESQKNLQRKQCSYGIWDEQYKVEKETYKGQQYSHIYFARLHFMRTLLRSLVSNWNPHLPVCTVLGLEEGKECIIVGTLYKHMKLKPTVLDEYAKERSATPLVKPHNFMHPDDHLVLEDESGRVKLSGAVLIPSVYVTGIVVALHGKETCVGDFLVLDILEADLPPQIPRLLISSEDKYVVFVSGLSIGSGISNPLQFQLLIDHITGHLGDEKEQGIAAQIVHVVICGNSVEISRALLNGQHLSAKDQTKLIEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSATNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFSDRDPFLIESCPHVYFIGNQDKFDTRLIKGPEGQMVRLISIPRFCEKGVAVMLNLRNLECHTLSFGTEFC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8927128 8935916 - Sed0005670.1 Sed12g1248 732204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1248 438 CDD MPP_PolD2_C 181 433 IPR041863 -
Sed12g1248 438 Gene3D - 173 437 - -
Sed12g1248 438 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
Sed12g1248 438 FunFam DNA polymerase delta small subunit 168 438 - -
Sed12g1248 438 Gene3D - 41 166 - -
Sed12g1248 438 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 431 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Sed12g1248 438 Pfam DNA polymerase alpha/epsilon subunit B 182 393 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0364 Sed-Chr2:40475793 Sed12g1248 Sed-Chr12:8927128 1.40E-162 dispersed
Sed12g1248 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 3.80E-213 dispersed
Sed12g1248 Sed-Chr12:8927128 Sed12g1249 Sed-Chr12:8927128 6.30E-261 tandem
Sed12g1248 Sed-Chr12:8927128 Sed02g0362 Sed-Chr2:40475793 6.20E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1248 K02328 - csv:101221438 816.994