Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1250 ATGAAGCTTAAACCTACCGTTCTGGATGAGTATGCAAAGGAGAGATCTGCCACTCCACTTGTTAAGCCACATAACTTTATGCACCCAGATGATCATCTAGTTTTGGAAGATGAAAGTGGGAGAGTCAAGCTTTCTGGGGCTGTGCTCATACCTTCTGTATACGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCCGACTTGCCACCTCAGATACCGCGGCTCCTCATATCAAGTGAAGACAAGTATGTGGTTTTCGTGTCGGGCCTAAGTATTGGGAGTGGCATCTCTAATCCTCTACAGTTCCAGCTCCTTATTGATCATATAACAGGACATTTAGGGGATGAAAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCTGTTGAAATTTCTCGTGCACTTTTAAATGGGCAGCATTTGTCTGCAAAAGACCAAACAAAGCTGATAGAACCGCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGATATCATGCCAGGTTCCAGTGACCCGGCCAATTTTTCCTTGCCTCAGCAGCCTTTGCACAGATGCCTTTTTCCTGGATCATCAGCCTATAATACTTTCAGATCTGCCACTAACCCTCATTGTTTTGAGCTCGATAATTTCAGGTTTCTTGGTACTTCAGGTCAGAACATAGATGATCTCGAGAAGTACTCAGAGGCTAAGGATAAGCTTGAATTTATGGAGAGGACATTGAGATGGAGGCATCTAGCACCAACTGCTCCAAACACTCTTGGTTGCTATCCTTTCTCTGATCGAGACCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTATTGGCAACCAGGACAAGTTCGATACTCGCTTAATAAAGGGACCTGAAGGGCAGATGGTAAGACTCATTTCGATTCCACGATTTTGCGAAAAGGGAGTTGCTGTAATGCTTAACTTGAGAAATCTTGAATGTCACACTCTGAGTTTCGGAACTGAATTCTGCTGA 1065 43.38 MKLKPTVLDEYAKERSATPLVKPHNFMHPDDHLVLEDESGRVKLSGAVLIPSVYVTGIVVALHGKETCVGDFLVLDILEADLPPQIPRLLISSEDKYVVFVSGLSIGSGISNPLQFQLLIDHITGHLGDEKEQGIAAQIVHVVICGNSVEISRALLNGQHLSAKDQTKLIEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSATNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFSDRDPFLIESCPHVYFIGNQDKFDTRLIKGPEGQMVRLISIPRFCEKGVAVMLNLRNLECHTLSFGTEFC 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8927128 8935204 - Sed0005670.3 Sed12g1250 732206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1250 354 Gene3D - 89 353 - -
Sed12g1250 354 CDD MPP_PolD2_C 97 349 IPR041863 -
Sed12g1250 354 FunFam DNA polymerase delta small subunit 84 354 - -
Sed12g1250 354 Pfam DNA polymerase alpha/epsilon subunit B 98 309 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed12g1250 354 Gene3D - 1 82 - -
Sed12g1250 354 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 1 347 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Sed12g1250 354 Pfam DNA polymerase delta subunit OB-fold domain 1 77 IPR040663 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1250 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 5.10E-160 dispersed
Sed12g1249 Sed-Chr12:8927128 Sed12g1250 Sed-Chr12:8927128 8.10E-208 tandem
Sed12g1250 Sed-Chr12:8927128 Sed12g1251 Sed-Chr12:8927128 8.50E-208 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1250 K02328 - csv:101221438 674.47