Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1252 ATGGAAATTGAGTCACAGAAGAATCTCCAGCGCAAGCAGTGTAGCTATGGAATTTGGGATGAGCAGTACAAGGTGGAGAAGGAGACGTACAAGGGCCAGCAATACAGCCACATTTACTTTGCTCGACTCCACTTCATGAGAACATTGCTCCGTTCACTTGTCTCTAACTGGAACCCTCATTTGCCTGTTTGTACTGTTCTGGGATTGGAAGAAGGCAAGGAATGTATTATTGTTGGAACCCTCTACAAGCACATGAAGCTTAAACCTACCGTTCTGGATGAGTATGCAAAGGAGAGATCTGCCACTCCACTTGTTAAGCCACATAACTTTATGCACCCAGATGATCATCTAGTTTTGGAAGATGAAAGTGGGAGAGTCAAGCTTTCTGGGGCTGTGCTCATACCTTCTGTATACGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCCGACTTGCCACCTCAGATACCGCGGCTCCTCATATCAAGTGAAGACAAGTATGTGGTTTTCGTGTCGGGCCTAAGTATTGGGAGTGGCATCTCTAATCCTCTACAGTTCCAGCTCCTTATTGATCATATAACAGGACATTTAGGGGATGAAAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCTGTTGAAATTTCTCGTGCACTTTTAAATGGGCAGCATTTGTCTGCAAAAGACCAAACAAAGCTGATAGAACCGCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGATATCATGCCAGGTTCCAGTGACCCGGCCAATTTTTCCTTGCCTCAGCAGCCTTTGCACAGATGCCTTTTTCCTGGATCATCAGCCTATAATACTTTCAGATCTGCCACTAACCCTCATTGTTTTGAGCTCGATAATTTCAGGTTTCTTGGTACTTCAGGTCAGAACATAGATGATCTCGAGAAGTACTCAGAGGCTAAGGATAAGCTTGAATTTATGGAGAGGACATTGAGATGGAGGCATCTAGCACCAACTGCTCCAAACACTCTTGGTACAATTCACATTTTTGTTTGTGGGTGGATAAGCCATTTAGAACAATCTCTTTTTGATTAA 1152 43.4 MEIESQKNLQRKQCSYGIWDEQYKVEKETYKGQQYSHIYFARLHFMRTLLRSLVSNWNPHLPVCTVLGLEEGKECIIVGTLYKHMKLKPTVLDEYAKERSATPLVKPHNFMHPDDHLVLEDESGRVKLSGAVLIPSVYVTGIVVALHGKETCVGDFLVLDILEADLPPQIPRLLISSEDKYVVFVSGLSIGSGISNPLQFQLLIDHITGHLGDEKEQGIAAQIVHVVICGNSVEISRALLNGQHLSAKDQTKLIEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSATNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGTIHIFVCGWISHLEQSLFD 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8927128 8935916 - Sed0005670.5 Sed12g1252 732208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1252 383 Gene3D - 41 166 - -
Sed12g1252 383 Pfam DNA polymerase alpha/epsilon subunit B 182 367 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed12g1252 383 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 365 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Sed12g1252 383 Gene3D - 173 382 - -
Sed12g1252 383 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0363 Sed-Chr2:40475793 Sed12g1252 Sed-Chr12:8927128 1.90E-190 dispersed
Sed12g1248 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 3.80E-213 dispersed
Sed12g1249 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 3.80E-213 dispersed
Sed12g1250 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 5.10E-160 dispersed
Sed12g1251 Sed-Chr12:8927128 Sed12g1252 Sed-Chr12:8927128 5.10E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1252 K02328 - csv:101221438 676.396