Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1268 | ATGGCTTCTTCCAATATTAAAACCAGCTCCATCAGCCAACAAGCAAACAAGCAAGAAGAAGATAAACAACAACAACAACTCCATCATCAACAACAACAACAACATCAACTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATTCATCATTGTTCAACTTCCAAACCCAAAACATTCAAGATCATCATCATCATCATCATCAACAACTACCCTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAAGTGATGATTTGGGTGAATTAGATCAAGCTCTTTTTCGTTATCTCGAAGGACAAGAATCCTCTACAACTACAACTCAAGATCAAAGACAGAGCTTGGGGATGAGACCGCCTACGTTGAACATCTTCCCATCGCAGCCGATGCACGTCGACCCAGTGCCAACTAAAGCAAATGTAGCATTGATTAGCCATGGTGATTCAAAGATCAAAGCATCAGAGTTGGCCAACCAACCCAGCAGTGGAGCCACTCCCTCTGGACAAGCCCCAACAACAACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAATAAGAAAGGATTGACCTCAAGTTCTGAGCAAGAAGGGCCCAAAACTCCCGATCCCAAGATTCTTAGAAGGCTGGCTCAAAATCGAGAGGCTGCGAGAAAAAGCAGGCTGAGAAAAAAGGCTTATGTTCAGCAATTGGAAATGAGTAGGATTAAGCTCACACAGTTGGAGCAAGACCTTCAAAGAGCAAGAACGCAGGGCATGCTTTTGGGTGGAGGAGCAGCCATTTTAGGAACTGACCAAGGACTTCCCCCTGGCCTCCATAACCTTAGCTCCGAGGCTGCGGTGTTTGACATTGAGTACGGGCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGGGCAGCCGTGCAAGAGCACTTACCGGAGAACGATCTACGGATGTTTGTCGATAACTGCCTGGCTCATTACGACGAGTTTGTAAACTTGAAGATGATGGTGGCTAAGTTGGACATATTTCACATTGTGTCCGGCATGTGGAAGACACCCGCGGAGAGGTGCTTCATGTGGATGGGCGATTTTAGGCCCTCTGAGCTCATTAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAATGAAGAGGCATTGAGTCAAGGGCTAGAGGCCCTTAACCAGTCCTTATCAGACACCATAACTTCTGACTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCTACCCTTGAAGGTTTTGTAAGACAGGCAGACAATTTGAGACACCAAACCCTTCATCGACTAGTTCAAATGTTGACAACCCGTCAAGCTGCAAGATGTTTGCTAGCAATTGCGGAGTATTTTCATCGGCTTCGAGCTCTAAGCTCTTTGTGGTTAGCTCGACCAAGGCAGGATTGA | 1512 | 46.1 | MASSNIKTSSISQQANKQEEDKQQQQLHHQQQQQHQLLQTPNFVIPKNSSLFNFQTQNIQDHHHHHHQQLPFSMNLPSISPNFISKDGGSDDLGELDQALFRYLEGQESSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPVPTKANVALISHGDSKIKASELANQPSSGATPSGQAPTTTEPHAKPPKREANKKGLTSSSEQEGPKTPDPKILRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQDLQRARTQGMLLGGGAAILGTDQGLPPGLHNLSSEAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENDLRMFVDNCLAHYDEFVNLKMMVAKLDIFHIVSGMWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQENEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTLHRLVQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9165658 | 9173982 | + | Sed0013219.1 | Sed12g1268 | 732224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 105 | 127 | - | - | |
Sed12g1268 | 503 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 214 | 229 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1268 | 503 | FunFam | BZIP family transcription factor | 210 | 259 | - | - | |
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Sed12g1268 | 503 | SMART | brlzneu | 207 | 270 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 105 | 139 | - | - | |
Sed12g1268 | 503 | Coils | Coil | 230 | 257 | - | - | |
Sed12g1268 | 503 | Gene3D | - | 211 | 261 | - | - | |
Sed12g1268 | 503 | ProSiteProfiles | DOG1 domain profile. | 285 | 499 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed12g1268 | 503 | Pfam | Seed dormancy control | 303 | 377 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed12g1268 | 503 | CDD | bZIP_HBP1b-like | 211 | 263 | - | - | |
Sed12g1268 | 503 | Pfam | bZIP transcription factor | 211 | 251 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1268 | 503 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 209 | 253 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 162 | 213 | - | - | |
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed12g1268 | 503 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 127 | 502 | - | - | |
Sed12g1268 | 503 | MobiDBLite | consensus disorder prediction | 162 | 180 | - | - | |
Sed12g1268 | 503 | SUPERFAMILY | Leucine zipper domain | 211 | 253 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1159 | Sed-Chr12:7691854 | Sed12g1268 | Sed-Chr12:9165658 | 4.70E-89 | dispersed | |
Sed12g1160 | Sed-Chr12:7691854 | Sed12g1268 | Sed-Chr12:9165658 | 3.70E-89 | dispersed | |
Sed12g1268 | Sed-Chr12:9165658 | Sed13g0972 | Sed-Chr13:7517364 | 5.70E-64 | dispersed | |
Sed12g1268 | Sed-Chr12:9165658 | Sed12g1269 | Sed-Chr12:9165658 | 7.30E-253 | tandem | |
Sed11g1222 | Sed-Chr11:28039170 | Sed12g1268 | Sed-Chr12:9165658 | 9.50E-98 | transposed | |
Sed12g1268 | Sed-Chr12:9165658 | Sed02g0339 | Sed-Chr2:39918160 | 1.00E-222 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40200 | PF14144 | DOG1 | 2.20E-30 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1268 | K14431 | - | csv:101204923 | 779.63 |