Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1268 ATGGCTTCTTCCAATATTAAAACCAGCTCCATCAGCCAACAAGCAAACAAGCAAGAAGAAGATAAACAACAACAACAACTCCATCATCAACAACAACAACAACATCAACTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATTCATCATTGTTCAACTTCCAAACCCAAAACATTCAAGATCATCATCATCATCATCATCAACAACTACCCTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAAGTGATGATTTGGGTGAATTAGATCAAGCTCTTTTTCGTTATCTCGAAGGACAAGAATCCTCTACAACTACAACTCAAGATCAAAGACAGAGCTTGGGGATGAGACCGCCTACGTTGAACATCTTCCCATCGCAGCCGATGCACGTCGACCCAGTGCCAACTAAAGCAAATGTAGCATTGATTAGCCATGGTGATTCAAAGATCAAAGCATCAGAGTTGGCCAACCAACCCAGCAGTGGAGCCACTCCCTCTGGACAAGCCCCAACAACAACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAATAAGAAAGGATTGACCTCAAGTTCTGAGCAAGAAGGGCCCAAAACTCCCGATCCCAAGATTCTTAGAAGGCTGGCTCAAAATCGAGAGGCTGCGAGAAAAAGCAGGCTGAGAAAAAAGGCTTATGTTCAGCAATTGGAAATGAGTAGGATTAAGCTCACACAGTTGGAGCAAGACCTTCAAAGAGCAAGAACGCAGGGCATGCTTTTGGGTGGAGGAGCAGCCATTTTAGGAACTGACCAAGGACTTCCCCCTGGCCTCCATAACCTTAGCTCCGAGGCTGCGGTGTTTGACATTGAGTACGGGCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGGGCAGCCGTGCAAGAGCACTTACCGGAGAACGATCTACGGATGTTTGTCGATAACTGCCTGGCTCATTACGACGAGTTTGTAAACTTGAAGATGATGGTGGCTAAGTTGGACATATTTCACATTGTGTCCGGCATGTGGAAGACACCCGCGGAGAGGTGCTTCATGTGGATGGGCGATTTTAGGCCCTCTGAGCTCATTAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAATGAAGAGGCATTGAGTCAAGGGCTAGAGGCCCTTAACCAGTCCTTATCAGACACCATAACTTCTGACTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCTACCCTTGAAGGTTTTGTAAGACAGGCAGACAATTTGAGACACCAAACCCTTCATCGACTAGTTCAAATGTTGACAACCCGTCAAGCTGCAAGATGTTTGCTAGCAATTGCGGAGTATTTTCATCGGCTTCGAGCTCTAAGCTCTTTGTGGTTAGCTCGACCAAGGCAGGATTGA 1512 46.1 MASSNIKTSSISQQANKQEEDKQQQQLHHQQQQQHQLLQTPNFVIPKNSSLFNFQTQNIQDHHHHHHQQLPFSMNLPSISPNFISKDGGSDDLGELDQALFRYLEGQESSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPVPTKANVALISHGDSKIKASELANQPSSGATPSGQAPTTTEPHAKPPKREANKKGLTSSSEQEGPKTPDPKILRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQDLQRARTQGMLLGGGAAILGTDQGLPPGLHNLSSEAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENDLRMFVDNCLAHYDEFVNLKMMVAKLDIFHIVSGMWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQENEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTLHRLVQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9165658 9173982 + Sed0013219.1 Sed12g1268 732224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1268 503 MobiDBLite consensus disorder prediction 105 127 - -
Sed12g1268 503 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 214 229 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1268 503 FunFam BZIP family transcription factor 210 259 - -
Sed12g1268 503 MobiDBLite consensus disorder prediction 1 36 - -
Sed12g1268 503 SMART brlzneu 207 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1268 503 MobiDBLite consensus disorder prediction 105 139 - -
Sed12g1268 503 Coils Coil 230 257 - -
Sed12g1268 503 Gene3D - 211 261 - -
Sed12g1268 503 ProSiteProfiles DOG1 domain profile. 285 499 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1268 503 Pfam Seed dormancy control 303 377 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1268 503 CDD bZIP_HBP1b-like 211 263 - -
Sed12g1268 503 Pfam bZIP transcription factor 211 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1268 503 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 209 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1268 503 MobiDBLite consensus disorder prediction 162 213 - -
Sed12g1268 503 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1268 503 PANTHER TRANSCRIPTION FACTOR TGA9 127 502 - -
Sed12g1268 503 MobiDBLite consensus disorder prediction 162 180 - -
Sed12g1268 503 SUPERFAMILY Leucine zipper domain 211 253 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1159 Sed-Chr12:7691854 Sed12g1268 Sed-Chr12:9165658 4.70E-89 dispersed
Sed12g1160 Sed-Chr12:7691854 Sed12g1268 Sed-Chr12:9165658 3.70E-89 dispersed
Sed12g1268 Sed-Chr12:9165658 Sed13g0972 Sed-Chr13:7517364 5.70E-64 dispersed
Sed12g1268 Sed-Chr12:9165658 Sed12g1269 Sed-Chr12:9165658 7.30E-253 tandem
Sed11g1222 Sed-Chr11:28039170 Sed12g1268 Sed-Chr12:9165658 9.50E-98 transposed
Sed12g1268 Sed-Chr12:9165658 Sed02g0339 Sed-Chr2:39918160 1.00E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40200 PF14144 DOG1 2.20E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1268 K14431 - csv:101204923 779.63