Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1269 ATGGCTTCTTCCAATATTAAAACCAGCTCCATCAGCCAACAAGCAAACAAGCAAGAAGAAGATAAACAACAACAACAACTCCATCATCAACAACAACAACAACATCAACTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATTCATCATTGTTCAACTTCCAAACCCAAAACATTCAAGATCATCATCATCATCATCATCAACAACTACCCTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAAGTGATGATTTGGGTGAATTAGATCAAGCTCTTTTTCGTTATCTCGAAGGACAAGAATCCTCTACAACTACAACTCAAGATCAAAGACAGAGCTTGGGGATGAGACCGCCTACGTTGAACATCTTCCCATCGCAGCCGATGCACGTCGACCCAGTGCCAACTAAAGCAAATGTAGCATTGATTAGCCATGGTGATTCAAAGATCAAAGCATCAGAGTTGGCCAACCAACCCAGCAGTGGAGCCACTCCCTCTGGACAAGCCCCAACAACAACCGAACCTCATGCCAAACCTCCAAAAATTCTTAGAAGGCTGGCTCAAAATCGAGAGGCTGCGAGAAAAAGCAGGCTGAGAAAAAAGGCTTATGTTCAGCAATTGGAAATGAGTAGGATTAAGCTCACACAGTTGGAGCAAGACCTTCAAAGAGCAAGAACGCAGGGCATGCTTTTGGGTGGAGGAGCAGCCATTTTAGGAACTGACCAAGGACTTCCCCCTGGCCTCCATAACCTTAGCTCCGAGGCTGCGGTGTTTGACATTGAGTACGGGCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGGGCAGCCGTGCAAGAGCACTTACCGGAGAACGATCTACGGATGTTTGTCGATAACTGCCTGGCTCATTACGACGAGTTTGTAAACTTGAAGATGATGGTGGCTAAGTTGGACATATTTCACATTGTGTCCGGCATGTGGAAGACACCCGCGGAGAGGTGCTTCATGTGGATGGGCGATTTTAGGCCCTCTGAGCTCATTAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAATGAAGAGGCATTGAGTCAAGGGCTAGAGGCCCTTAACCAGTCCTTATCAGACACCATAACTTCTGACTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCTACCCTTGAAGGTTTTGTAAGACAGGCAGACAATTTGAGACACCAAACCCTTCATCGACTAGTTCAAATGTTGACAACCCGTCAAGCTGCAAGATGTTTGCTAGCAATTGCGGAGTATTTTCATCGGCTTCGAGCTCTAAGCTCTTTGTGGTTAGCTCGACCAAGGCAGGATTGA 1443 45.95 MASSNIKTSSISQQANKQEEDKQQQQLHHQQQQQHQLLQTPNFVIPKNSSLFNFQTQNIQDHHHHHHQQLPFSMNLPSISPNFISKDGGSDDLGELDQALFRYLEGQESSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPVPTKANVALISHGDSKIKASELANQPSSGATPSGQAPTTTEPHAKPPKILRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQDLQRARTQGMLLGGGAAILGTDQGLPPGLHNLSSEAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENDLRMFVDNCLAHYDEFVNLKMMVAKLDIFHIVSGMWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQENEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTLHRLVQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9165658 9173982 + Sed0013219.2 Sed12g1269 732225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1269 480 SMART brlzneu 184 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1269 480 MobiDBLite consensus disorder prediction 162 187 - -
Sed12g1269 480 MobiDBLite consensus disorder prediction 1 36 - -
Sed12g1269 480 ProSiteProfiles DOG1 domain profile. 262 476 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1269 480 FunFam BZIP family transcription factor 187 236 - -
Sed12g1269 480 PANTHER TRANSCRIPTION FACTOR TGA9 126 479 - -
Sed12g1269 480 Pfam Seed dormancy control 280 354 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1269 480 Gene3D - 188 238 - -
Sed12g1269 480 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 191 206 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1269 480 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1269 480 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1269 480 CDD bZIP_HBP1b-like 188 240 - -
Sed12g1269 480 SUPERFAMILY Leucine zipper domain 188 230 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1269 480 Pfam bZIP transcription factor 186 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1269 480 Coils Coil 207 234 - -
Sed12g1269 480 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0339 Sed-Chr2:39918160 Sed12g1269 Sed-Chr12:9165658 4.30E-205 dispersed
Sed11g1222 Sed-Chr11:28039170 Sed12g1269 Sed-Chr12:9165658 1.30E-94 dispersed
Sed12g1269 Sed-Chr12:9165658 Sed13g0972 Sed-Chr13:7517364 5.40E-64 dispersed
Sed12g1268 Sed-Chr12:9165658 Sed12g1269 Sed-Chr12:9165658 7.30E-253 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40201 PF14144 DOG1 2.00E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1269 K14431 - csv:101204923 722.235