Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1275 ATGGGTGATGAAATCTTTGATGCCATGAATCTTGACTTGAATCTGGGTCCGATTCCAGAGCCGCTTTCAAACGTGGTTCAAAATGAAGATGTGAATTTAGCTGATTTGACTGAGGATTCTGTTCATAGATTTGGAGAAGCTATCAGGAGGCATCAGTGGAGAAGGCATCGAGTCCAAATTCCTTCTGAGACTCAGAATAATTCATTGGAATTGAGTGAAATTATGGTCAATTCAGGCAATTCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAGAGAAAAAATGAGGCAGCAGGGAAAACATGTGAAATTAACTTTGAAGCTTTGGAAGATGAAAAGGTAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGAATCTGATGGGAGTTTCTTTGATTGTAATATTTGTCTGGACTTAGCTAGGGACCCTGTTGTAACTTGTTGTGGTCATCTTTACTGCTGGTCGTGCCTTTATCGATGGTTACATCTACATTCCGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTATAAAGAATGTGACTCCAATATGTGGGCGTGGCAGCAACACTCCTGTGACCGAAGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCAAGCTCGGAAAGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCGTTAAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACAGATTTGATTTCAATCGTGACCTAGACCAACCACCGGAGTCCGACAGTTCACTTGAAATATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGACTTCGTACAGAACAGATTTCATTGCCCCCCCATGACGACGAAGGAGTTTTAGAACACCCTGATGCATCTGGCAATGAGGCAGGGGAAACCCGTCTTCAACCTCTCCCATTGCTTCGATCATTACTACACCGAACTCGAGTTTCATCTCTTACCTCTGCGTTTAATTCTGCCGATACACTTCCAGAGGGATTTATATATACTGATCCTCTTATTCCTGGATATCAAGAGCAGCCTCCACCACCTGCTGTTGAAGATAGAGATTCTTTTTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCGCGGTCTCCCTTTCAACATCATCATCCAGAAGAAGAAATGATCCTTTACAGGCTTCTGATGTAGATAGCGGAAACACTCGGGCACCCAGACGGAGAAGATTGGCTTGA 1260 43.49 MGDEIFDAMNLDLNLGPIPEPLSNVVQNEDVNLADLTEDSVHRFGEAIRRHQWRRHRVQIPSETQNNSLELSEIMVNSGNSLQAGEGSITAEERKNEAAGKTCEINFEALEDEKVENKSDVEKGSESDGSFFDCNICLDLARDPVVTCCGHLYCWSCLYRWLHLHSDAKECPVCKGEVTIKNVTPICGRGSNTPVTEEDAALKIPLRPQARKVESLRQTIQRTALSFPVEEMIRRLGNRFDFNRDLDQPPESDSSLEIFGRSPTLLNRILTSRGLRTEQISLPPHDDEGVLEHPDASGNEAGETRLQPLPLLRSLLHRTRVSSLTSAFNSADTLPEGFIYTDPLIPGYQEQPPPPAVEDRDSFSSIAAVINSESQMDTAVEIDSAVSLSTSSSRRRNDPLQASDVDSGNTRAPRRRRLA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9287199 9289520 + Sed0027278.1 Sed12g1275 732231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1275 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 245 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Sed12g1275 419 SUPERFAMILY RING/U-box 130 186 - -
Sed12g1275 419 MobiDBLite consensus disorder prediction 280 294 - -
Sed12g1275 419 MobiDBLite consensus disorder prediction 279 306 - -
Sed12g1275 419 SMART ring_2 134 174 IPR001841 -
Sed12g1275 419 Pfam RING-type zinc-finger 134 162 IPR027370 -
Sed12g1275 419 MobiDBLite consensus disorder prediction 381 408 - -
Sed12g1275 419 CDD RING-HC_RNF5-like 132 175 - -
Sed12g1275 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 237 IPR013083 -
Sed12g1275 419 MobiDBLite consensus disorder prediction 381 419 - -
Sed12g1275 419 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Sed12g1275 419 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0370 Sed-Chr2:40561630 Sed12g1275 Sed-Chr12:9287199 3.90E-199 dispersed
Sed02g0371 Sed-Chr2:40561630 Sed12g1275 Sed-Chr12:9287199 3.90E-199 dispersed
Sed05g1371 Sed-Chr5:26654855 Sed12g1275 Sed-Chr12:9287199 5.80E-24 dispersed
Sed10g1313 Sed-Chr10:28769847 Sed12g1275 Sed-Chr12:9287199 7.60E-24 dispersed
Sed11g1002 Sed-Chr11:25145519 Sed12g1275 Sed-Chr12:9287199 2.30E-23 dispersed
Sed12g1275 Sed-Chr12:9287199 Sed14g1456 Sed-Chr14:23032667 7.20E-20 dispersed
Sed12g1275 Sed-Chr12:9287199 Sed04g2592 Sed-Chr4:38428933 2.70E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1275 K10666 - csv:101220497 688.723