Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1275 | ATGGGTGATGAAATCTTTGATGCCATGAATCTTGACTTGAATCTGGGTCCGATTCCAGAGCCGCTTTCAAACGTGGTTCAAAATGAAGATGTGAATTTAGCTGATTTGACTGAGGATTCTGTTCATAGATTTGGAGAAGCTATCAGGAGGCATCAGTGGAGAAGGCATCGAGTCCAAATTCCTTCTGAGACTCAGAATAATTCATTGGAATTGAGTGAAATTATGGTCAATTCAGGCAATTCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAGAGAAAAAATGAGGCAGCAGGGAAAACATGTGAAATTAACTTTGAAGCTTTGGAAGATGAAAAGGTAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGAATCTGATGGGAGTTTCTTTGATTGTAATATTTGTCTGGACTTAGCTAGGGACCCTGTTGTAACTTGTTGTGGTCATCTTTACTGCTGGTCGTGCCTTTATCGATGGTTACATCTACATTCCGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTATAAAGAATGTGACTCCAATATGTGGGCGTGGCAGCAACACTCCTGTGACCGAAGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCAAGCTCGGAAAGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCGTTAAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACAGATTTGATTTCAATCGTGACCTAGACCAACCACCGGAGTCCGACAGTTCACTTGAAATATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGACTTCGTACAGAACAGATTTCATTGCCCCCCCATGACGACGAAGGAGTTTTAGAACACCCTGATGCATCTGGCAATGAGGCAGGGGAAACCCGTCTTCAACCTCTCCCATTGCTTCGATCATTACTACACCGAACTCGAGTTTCATCTCTTACCTCTGCGTTTAATTCTGCCGATACACTTCCAGAGGGATTTATATATACTGATCCTCTTATTCCTGGATATCAAGAGCAGCCTCCACCACCTGCTGTTGAAGATAGAGATTCTTTTTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCGCGGTCTCCCTTTCAACATCATCATCCAGAAGAAGAAATGATCCTTTACAGGCTTCTGATGTAGATAGCGGAAACACTCGGGCACCCAGACGGAGAAGATTGGCTTGA | 1260 | 43.49 | MGDEIFDAMNLDLNLGPIPEPLSNVVQNEDVNLADLTEDSVHRFGEAIRRHQWRRHRVQIPSETQNNSLELSEIMVNSGNSLQAGEGSITAEERKNEAAGKTCEINFEALEDEKVENKSDVEKGSESDGSFFDCNICLDLARDPVVTCCGHLYCWSCLYRWLHLHSDAKECPVCKGEVTIKNVTPICGRGSNTPVTEEDAALKIPLRPQARKVESLRQTIQRTALSFPVEEMIRRLGNRFDFNRDLDQPPESDSSLEIFGRSPTLLNRILTSRGLRTEQISLPPHDDEGVLEHPDASGNEAGETRLQPLPLLRSLLHRTRVSSLTSAFNSADTLPEGFIYTDPLIPGYQEQPPPPAVEDRDSFSSIAAVINSESQMDTAVEIDSAVSLSTSSSRRRNDPLQASDVDSGNTRAPRRRRLA | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9287199 | 9289520 | + | Sed0027278.1 | Sed12g1275 | 732231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1275 | 419 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 97 | 245 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Sed12g1275 | 419 | SUPERFAMILY | RING/U-box | 130 | 186 | - | - | |
Sed12g1275 | 419 | MobiDBLite | consensus disorder prediction | 280 | 294 | - | - | |
Sed12g1275 | 419 | MobiDBLite | consensus disorder prediction | 279 | 306 | - | - | |
Sed12g1275 | 419 | SMART | ring_2 | 134 | 174 | IPR001841 | - | |
Sed12g1275 | 419 | Pfam | RING-type zinc-finger | 134 | 162 | IPR027370 | - | |
Sed12g1275 | 419 | MobiDBLite | consensus disorder prediction | 381 | 408 | - | - | |
Sed12g1275 | 419 | CDD | RING-HC_RNF5-like | 132 | 175 | - | - | |
Sed12g1275 | 419 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 237 | IPR013083 | - | |
Sed12g1275 | 419 | MobiDBLite | consensus disorder prediction | 381 | 419 | - | - | |
Sed12g1275 | 419 | ProSiteProfiles | Zinc finger RING-type profile. | 134 | 175 | IPR001841 | - | |
Sed12g1275 | 419 | ProSitePatterns | Zinc finger RING-type signature. | 149 | 158 | IPR017907 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0370 | Sed-Chr2:40561630 | Sed12g1275 | Sed-Chr12:9287199 | 3.90E-199 | dispersed | |
Sed02g0371 | Sed-Chr2:40561630 | Sed12g1275 | Sed-Chr12:9287199 | 3.90E-199 | dispersed | |
Sed05g1371 | Sed-Chr5:26654855 | Sed12g1275 | Sed-Chr12:9287199 | 5.80E-24 | dispersed | |
Sed10g1313 | Sed-Chr10:28769847 | Sed12g1275 | Sed-Chr12:9287199 | 7.60E-24 | dispersed | |
Sed11g1002 | Sed-Chr11:25145519 | Sed12g1275 | Sed-Chr12:9287199 | 2.30E-23 | dispersed | |
Sed12g1275 | Sed-Chr12:9287199 | Sed14g1456 | Sed-Chr14:23032667 | 7.20E-20 | dispersed | |
Sed12g1275 | Sed-Chr12:9287199 | Sed04g2592 | Sed-Chr4:38428933 | 2.70E-35 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1275 | K10666 | - | csv:101220497 | 688.723 |