Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1276 ATGGAGTTGGCTTTGAGGCTTGGCGATTATTCTCCCAATTCCGATAAGCCATTTGGGCTTCTCTCTAAACCTTCTTCTTCTTCCTCCCTCATGGCTTTGGGGTTCTGTGTTGCTTCTCGTTCGCCTTCTCGTTCGATTCATGACGACGATGATGACGATGATGATGATGATGATGAAGAGAAAATGATCGCTCGTGGTTCGGTATCCGGTTTGGATCCTCCCGTTCAGCTTGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCCCATCAATCTTCTTCTCACCTCACATTTCCTTGGCTTTCTGATCGCTTGATGCCGGAACTGGGTTGTTCGGAGGGAGCTGAAAAAGGGTTGGATGTGAACCGGCTTCCGGCCGCGGGAGCGTTGTCGTCTCCGAACGGTAATACGGTGTCGAGTTTTCAGATGGATTTTGTGGTGAGAAATGGAGGATCAGGATCAAGATGCATTAAGAGATCTCCTGAAATGGAAATGGAGACTGAAAGAGCTTCGTCCAGAATGAGTGATGATGAAGAAAATATTGGCTCTGCTCGAAAAAAGCTTAGACTTTCTAAACAACAATCGGCTTTTCTTGAAGAAAGCTTTAAAGAACACAGCACCCTCAATCCTAAGCAGAAACTAGCACTAGCCAAGCAGCTAAACCTCAGGCCTAGGCAAGTAGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAACAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTAAAAACTTCTCAGCCTTTTTATATGCAACTCCCAGCCACCACCCTCACTATGTGCCCCTCTTGCGAGCGCGTCTCCTCCACCGCTCCCACCGTCACGGTCCCCACCCCGAACCCAACTGCTCTTTGCCTCGCGAACAAGCCGAGAATCTTGCCATTTCCTCACCTGCACCAGGCTGCTTCATGA 1005 47.16 MELALRLGDYSPNSDKPFGLLSKPSSSSSLMALGFCVASRSPSRSIHDDDDDDDDDDDEEKMIARGSVSGLDPPVQLDLLPLAPVPRSSHQSSSHLTFPWLSDRLMPELGCSEGAEKGLDVNRLPAAGALSSPNGNTVSSFQMDFVVRNGGSGSRCIKRSPEMEMETERASSRMSDDEENIGSARKKLRLSKQQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVSSTAPTVTVPTPNPTALCLANKPRILPFPHLHQAAS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9306669 9309031 + Sed0022520.1 Sed12g1276 732232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1276 334 Coils Coil 247 277 - -
Sed12g1276 334 CDD homeodomain 185 242 IPR001356 GO:0003677(InterPro)
Sed12g1276 334 Pfam Homeobox associated leucine zipper 241 275 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1276 334 Pfam Homeodomain 185 239 IPR001356 GO:0003677(InterPro)
Sed12g1276 334 ProSitePatterns 'Homeobox' domain signature. 216 239 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed12g1276 334 Gene3D - 189 239 - -
Sed12g1276 334 SMART halz 241 284 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1276 334 SUPERFAMILY Homeodomain-like 173 242 IPR009057 -
Sed12g1276 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 60 306 IPR050762 -
Sed12g1276 334 SMART HOX_1 183 245 IPR001356 GO:0003677(InterPro)
Sed12g1276 334 MobiDBLite consensus disorder prediction 159 181 - -
Sed12g1276 334 ProSiteProfiles 'Homeobox' domain profile. 181 241 IPR001356 GO:0003677(InterPro)
Sed12g1276 334 CDD bZIP 234 273 - -
Sed12g1276 334 MobiDBLite consensus disorder prediction 39 59 - -
Sed12g1276 334 MobiDBLite consensus disorder prediction 152 181 - -
Sed12g1276 334 MobiDBLite consensus disorder prediction 1 25 - -
Sed12g1276 334 FunFam Homeobox-leucine zipper protein 18 170 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0689 Sed-Chr7:5141100 Sed12g1276 Sed-Chr12:9306669 5.40E-56 dispersed
Sed09g1437 Sed-Chr9:38253639 Sed12g1276 Sed-Chr12:9306669 4.10E-62 dispersed
Sed12g1276 Sed-Chr12:9306669 Sed13g1053 Sed-Chr13:8970251 2.50E-52 dispersed
Sed12g1276 Sed-Chr12:9306669 Sed12g1277 Sed-Chr12:9306669 1.20E-118 tandem
Sed04g1686 Sed-Chr4:31544952 Sed12g1276 Sed-Chr12:9306669 1.00E-51 transposed
Sed06g0211 Sed-Chr6:1565784 Sed12g1276 Sed-Chr12:9306669 8.10E-35 transposed
Sed12g0039 Sed-Chr12:269598 Sed12g1276 Sed-Chr12:9306669 5.40E-53 transposed
Sed12g1276 Sed-Chr12:9306669 Sed02g0369 Sed-Chr2:40525870 1.70E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40203 PF00046 Homeodomain 2.20E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1276 K09338 - csv:101222778 373.244