Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1336 ATGAACGACCTGTTCTCCTCTCGCTCCTTCTCCCGCGACGCCCACGTCGTCGAGATGGCCAACCCCTCCTCCTCCCCCACCGCCGTCAACCTCGACAAGTTCTTCGAAGACGTCGAGTCCGTCAAGGACGAGCTCAAGGAGCTCGAGCGCCTCTTCCAGAGCCTCCACGACTCCCACGAGCAGAGCAAGACCCTCCACAACGCCAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGACGTCGCCCTTGCCCTCAAGAAGGCTAAGCTCATCAAGGTCCGCTTGGAGGCCCTCGACCGCTCCAATGCCGCCAATCGCAGCCTCCCCGGTTGCGGCCCCGGTTCCTCCTCCGACAGGACCAGGACCTCTGTGGTCAATGGCTTGCGGAAGAAGCTGCAGGATTCCATGGAGGGCTTTCATAATTTGAGGCAGCAGATCTCCTCCGAGTATAGGGACACCGTGCAGCGAAGGTATTTCACTGTTACTGGGGAAAATCCGGATGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGATACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTAAAAGACTTGGAAAGGAATCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGTGAGAAACTCGACGACATTGAGAGCCAAGTGAACAGAGCTCATTCTTTTGTTCGAGGCGGCACACAGGAGTTGTCGACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACACTTATTGCCATCATCATTTTGTTGATCATTGCCCTGGTGGTTATCCTCAGCCTGAAGCCTTGGAATTGGAATAGTGGTGGTGGTTCAAACACAGCCCCTGCGAACCCCACCCCCACGGCCTCCTCACCCCCGGCAACCCCTTGA 966 54.66 MNDLFSSRSFSRDAHVVEMANPSSSPTAVNLDKFFEDVESVKDELKELERLFQSLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMEGFHNLRQQISSEYRDTVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELSTARVYQKNTRKWTLIAIIILLIIALVVILSLKPWNWNSGGGSNTAPANPTPTASSPPATP 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10205518 10207875 - Sed0009710.1 Sed12g1336 732292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1336 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Sed12g1336 321 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Sed12g1336 321 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed12g1336 321 Gene3D - 29 161 - -
Sed12g1336 321 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed12g1336 321 SMART tSNARE_6 196 263 IPR000727 -
Sed12g1336 321 PANTHER SYNTAXIN 33 282 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed12g1336 321 FunFam Syntaxin 132 194 293 - -
Sed12g1336 321 Pfam SNARE domain 237 289 IPR000727 -
Sed12g1336 321 Coils Coil 31 58 - -
Sed12g1336 321 CDD SNARE_syntaxin1-like 200 260 - -
Sed12g1336 321 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Sed12g1336 321 MobiDBLite consensus disorder prediction 302 321 - -
Sed12g1336 321 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Sed12g1336 321 Coils Coil 204 224 - -
Sed12g1336 321 Gene3D - 198 293 - -
Sed12g1336 321 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2057 Sed-Chr1:15405292 Sed12g1336 Sed-Chr12:10205518 5.30E-89 dispersed
Sed12g1059 Sed-Chr12:6925863 Sed12g1336 Sed-Chr12:10205518 3.90E-51 dispersed
Sed12g1060 Sed-Chr12:6925863 Sed12g1336 Sed-Chr12:10205518 2.50E-51 dispersed
Sed12g1336 Sed-Chr12:10205518 Sed14g0266 Sed-Chr14:2800582 9.10E-100 dispersed
Sed12g1336 Sed-Chr12:10205518 Sed08g2301 Sed-Chr8:36458517 1.60E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1336 K08486 - csv:101208931 519.235