Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1341 ATGGAGGAAATCGAAATCCCTGAGTACTTTCTGTGTCCCATCTCCCTGGAAATGATGAAGGATCCGGTGACGGTCCCCTCCGGCATCACCTACGACCGGCAGTCCATCGAGACGTGGCTGTACTCCTCCAAACACCCCTTCTGCCCTGTAACCAAACGCCCCATCTCCGAGTCCGACTCCCTGACCCCCAACCACACCCTCCGCCGCCTGATCCAAGCCTGGTGCACCCTCCACTCCCACCACGGCATCGAGCGCTTCCCCACCCCCAAACCCCCCGTCTCCAAACCCCACATCCTTAAGCTCATCTCCCCCGCCGCCACCGCCACCCCTTCCTCCCTCCTCTCCTCCATCCGCCGCCTCCGCTCCCTCGCCGCCGACTCCGAATCCAACCGCCGATGCATCGACTCCGCCGGCGCCCCCCTCTTCCTCGCCTCCGTTATCTCCAACTCCGTCTCCGGTCCCCAAAGCCAAGACTCCTCTGTCTCTTGCCACGAGGCCATTTCCACCCTCCACAACCTCCGCCTCTCCGACTCCACCCTCCGAGCGTTGACCGCCTCCGGCGAGTTTTTCGAGACGTTGACCAGGGTCATGGAGCAGGGCACGTACGAGTCGCGAGCGTACGCGGCGTTGCTTCTGAAATCCATGGTGGAGGTGGGCGACCCAATGGAGATAACCTTCCTCAAACGCGAACTCTTCGTGGAGATCGTGGGGATGTTGAAGGACCCGACCGAATCGCAGCAGAGCTTGAAGGCGGCGCTGGGGGTTCTGGTGGCGGCAGGGCCGTGGGGGAGGAACAGAGTGAAGGCGGTGGAGGCGGGTGGGGTGGAGGCGTTGGTGGAGATTCTGCTGTCGGCGCCGGAGAAGAGGGTGTGCGAGATGGCGTTGGCGGCGGCGGATCTGCTGTGTGGGTGCGCGGAAGGGAGGGCGGCGCTGCTGGGGCACGGCGGAGGGATGGCGGTGGTGGCGAAGAAGATACTGAGAGTGTCGCAGGTGGGGAGTGAGAGGGCGGTGAGGATTCTGCTGTCGGTGGCGAAGTACTCGGCGACGCCGGCGGTGTTGATGGAAATGGCGGAGCTGGGGATTGTGGCGAAGCTGTGTTTGGTTCTGCAAATAGTGGAGAGTGGGAGCAAGACGAAGGAGAAGGCGAAGGAGATCTTGAAGATGCATGCGAGGGTTTGGAAGAATTCGCATTGCATTCCTTCGAAGTTGGTTTCTTCTTACCCTGCCAATTAA 1233 61.96 MEEIEIPEYFLCPISLEMMKDPVTVPSGITYDRQSIETWLYSSKHPFCPVTKRPISESDSLTPNHTLRRLIQAWCTLHSHHGIERFPTPKPPVSKPHILKLISPAATATPSSLLSSIRRLRSLAADSESNRRCIDSAGAPLFLASVISNSVSGPQSQDSSVSCHEAISTLHNLRLSDSTLRALTASGEFFETLTRVMEQGTYESRAYAALLLKSMVEVGDPMEITFLKRELFVEIVGMLKDPTESQQSLKAALGVLVAAGPWGRNRVKAVEAGGVEALVEILLSAPEKRVCEMALAAADLLCGCAEGRAALLGHGGGMAVVAKKILRVSQVGSERAVRILLSVAKYSATPAVLMEMAELGIVAKLCLVLQIVESGSKTKEKAKEILKMHARVWKNSHCIPSKLVSSYPAN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10260746 10262317 - Sed0013851.1 Sed12g1341 732297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1341 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Sed12g1341 410 CDD RING-Ubox_PUB 7 59 IPR045210 -
Sed12g1341 410 SMART Ubox_2 9 74 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g1341 410 SUPERFAMILY RING/U-box 3 84 - -
Sed12g1341 410 Pfam U-box domain 6 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g1341 410 PANTHER WDSAM1 PROTEIN 2 406 IPR045185 GO:0061630(InterPro)
Sed12g1341 410 SUPERFAMILY ARM repeat 115 375 IPR016024 -
Sed12g1341 410 Gene3D - 96 399 IPR011989 -
Sed12g1341 410 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4160 Sed-Chr1:70357988 Sed12g1341 Sed-Chr12:10260746 2.50E-08 dispersed
Sed05g0212 Sed-Chr5:1285891 Sed12g1341 Sed-Chr12:10260746 1.90E-08 dispersed
Sed08g1161 Sed-Chr8:23439468 Sed12g1341 Sed-Chr12:10260746 2.00E-67 dispersed
Sed12g1341 Sed-Chr12:10260746 Sed14g0533 Sed-Chr14:5329167 1.20E-104 dispersed
Sed12g1341 Sed-Chr12:10260746 Sed12g1495 Sed-Chr12:19913221 9.90E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1341 - - - 0.0