Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1342 | ATGGCGACCTACCTTCATGGAAATTCTGAGTTCCAATCTGCAGATGGCGGCCTCCAAACCCTCCTCTTAATGAATCCCAGCTACGCTCAATTCTCCGATGCCCCGCCCCCGCCGCCCGCACCTCCGCCCCACCCTAATCTAGTTTTCTTCAACTCTGTTACGGGTGCTAACACCTTCTCTACACACAATTTGGCTCACGCGCCGCAACAATTTGTCGGTATCCCGCTACAGACGATGGCGATGGCGTCTCCAACGTCACAAGACCACAATTCGTATTCCATGAACACCCACCATGACATCTCCGCCTTGCACGGCTTTGTTCCCCGCGTTCAGCATGATATCTGGAAGCCCATAGACCCATCCACGGCGGCGCGTGAGAATACACGCGCTCCGCAGGGGCTGTCTTTGAGCCTGTCTTCACAGAATCCACCTGGGTTCAGGTCTAGCGATGTTCACTCGCTGAGCCAACAGGCGGTTTCTGGGGAGGAGAATGCGCGAATCTCCGGTGGATCTCCGTCTTCGTGTTCGGGCATCATTAACGGCGTGGCGGGAATTCAGCGCGTGTTGATTAGCTCGAAGTATCTCAAGGCTACACAGCAACTTCTGGATGAAGTTGTTAATGTTACCCAAAACGGAATTAAGAAAGAATTGTCTCCGAAAAAGACCGCCGGAAATCTAAACAAGATGATCGGGGATGTATCTGCAGAGGGCTCTATCGAGGGAGATTCCGACGGTAAACGCGCTGCCGAGATCACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCTTAAGCATGCTAGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCACCAAATGAAGATAGTAATATCTTCATTCGAGCAGGCGGCCGGGGTCGGTTCGGCCAGAACCTACACCGCAGTCGCACTACAAACGATTTCGAAGCAATTCCGCTGCTTAAAAGACGCGATCAGCCGGCAAATCAAAGCAGCAAACAAGAGTTTGGGAGAAGAAGAAAGTGTTGGAAGAAAAACGGAAGGCTCCCGGTTGAAATTCGTGGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAACTGGGCATGATCCAACACAATGCTTGGAGACCTCAAAGAGGCTTACCGGAAAGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACTTGCTCGCTAAACAAGCAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAGGAACAAGAACAGAACGGAGGCGGACCGGCACCGGTGACGGCGGAGGAAAAAAGCGACGACAATTCACCACCGGAAACAAAAAGCCCCAATTCAAAACAAGAAAACTCCCAAAACCAAAACGTACATCCTTCAATTTCAATCTCAACATCCTCCGGTGGAAATATCCGAAACCCATCTGGATTTACCCTCATCGGAACCTCGTCGGAGCTCGACGGAATCACTCAAGGAAGCCCCAAAAAACAGAGAGTACCTGAAATCATCCATTTCTCAAACAACAACAATTTCATAAACATGGACATCAAACCCCAAGAAGAAGATGAACAAACCCAAAATCAAAATCATCACCTTTCCATGAAATTTGATGAAGAAAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGCCGGGTTCGGCCAATACCCAATCGGCGAAATCGGCCGATTCGACGCTGCCGATCAATTCACTCCACGATTCTCCGGCAACAATGGCGTCTCCTTAACTCTGGGCCTTCCCCATTGCGAAAATCTATCTCTAAACTCAGGAACCCACCAAAACTTTCTCCCAAATCAGAGCATCCATTTAGGAAGAAGAACAGACATTGGAAAACCCACTGAATTTTCCGCCATTAACGCCTCTGGAGCTCACTCTTCTACTGCATTTGAAACAATCAACATCCAAAATGGAAAGAGATTTGCAGCTCAGTTACTGCCAGACTTTGTGGCCTAG | 2073 | 49.06 | MATYLHGNSEFQSADGGLQTLLLMNPSYAQFSDAPPPPPAPPPHPNLVFFNSVTGANTFSTHNLAHAPQQFVGIPLQTMAMASPTSQDHNSYSMNTHHDISALHGFVPRVQHDIWKPIDPSTAARENTRAPQGLSLSLSSQNPPGFRSSDVHSLSQQAVSGEENARISGGSPSSCSGIINGVAGIQRVLISSKYLKATQQLLDEVVNVTQNGIKKELSPKKTAGNLNKMIGDVSAEGSIEGDSDGKRAAEITTAERQEIQMKKAKLLSMLDEVEQRYRQYHHQMKIVISSFEQAAGVGSARTYTAVALQTISKQFRCLKDAISRQIKAANKSLGEEESVGRKTEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHLLAKQAGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGPAPVTAEEKSDDNSPPETKSPNSKQENSQNQNVHPSISISTSSGGNIRNPSGFTLIGTSSELDGITQGSPKKQRVPEIIHFSNNNNFINMDIKPQEEDEQTQNQNHHLSMKFDEERQNRDGYSFLGQPHFNIAGFGQYPIGEIGRFDAADQFTPRFSGNNGVSLTLGLPHCENLSLNSGTHQNFLPNQSIHLGRRTDIGKPTEFSAINASGAHSSTAFETINIQNGKRFAAQLLPDFVA | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10289584 | 10293057 | - | Sed0015804.1 | Sed12g1342 | 732298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1342 | 690 | SMART | prehox3 | 183 | 324 | IPR006563 | - | |
Sed12g1342 | 690 | ProSiteProfiles | 'Homeobox' domain profile. | 369 | 432 | IPR001356 | GO:0003677(InterPro) | |
Sed12g1342 | 690 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 120 | 477 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed12g1342 | 690 | FunFam | BEL1-like homeodomain protein 4 | 375 | 437 | - | - | |
Sed12g1342 | 690 | Pfam | Associated with HOX | 189 | 323 | IPR006563 | - | |
Sed12g1342 | 690 | CDD | homeodomain | 372 | 433 | IPR001356 | GO:0003677(InterPro) | |
Sed12g1342 | 690 | MobiDBLite | consensus disorder prediction | 443 | 525 | - | - | |
Sed12g1342 | 690 | Pfam | Homeobox KN domain | 389 | 428 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed12g1342 | 690 | MobiDBLite | consensus disorder prediction | 125 | 173 | - | - | |
Sed12g1342 | 690 | MobiDBLite | consensus disorder prediction | 122 | 173 | - | - | |
Sed12g1342 | 690 | Gene3D | - | 375 | 437 | - | - | |
Sed12g1342 | 690 | Coils | Coil | 256 | 283 | - | - | |
Sed12g1342 | 690 | MobiDBLite | consensus disorder prediction | 467 | 518 | - | - | |
Sed12g1342 | 690 | SMART | HOX_1 | 372 | 436 | IPR001356 | GO:0003677(InterPro) | |
Sed12g1342 | 690 | SUPERFAMILY | Homeodomain-like | 373 | 439 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3216 | Sed-Chr1:59287834 | Sed12g1342 | Sed-Chr12:10289584 | 1.10E-136 | dispersed | |
Sed01g3217 | Sed-Chr1:59287834 | Sed12g1342 | Sed-Chr12:10289584 | 1.10E-136 | dispersed | |
Sed02g0459 | Sed-Chr2:41804815 | Sed12g1342 | Sed-Chr12:10289584 | 9.40E-269 | dispersed | |
Sed02g0460 | Sed-Chr2:41804815 | Sed12g1342 | Sed-Chr12:10289584 | 9.40E-269 | dispersed | |
Sed07g0787 | Sed-Chr7:5833243 | Sed12g1342 | Sed-Chr12:10289584 | 2.60E-67 | dispersed | |
Sed07g0788 | Sed-Chr7:5833243 | Sed12g1342 | Sed-Chr12:10289584 | 4.30E-54 | dispersed | |
Sed10g0422 | Sed-Chr10:2626412 | Sed12g1342 | Sed-Chr12:10289584 | 1.30E-66 | dispersed | |
Sed11g1294 | Sed-Chr11:28669622 | Sed12g1342 | Sed-Chr12:10289584 | 2.50E-63 | dispersed | |
Sed11g1295 | Sed-Chr11:28669622 | Sed12g1342 | Sed-Chr12:10289584 | 2.50E-63 | dispersed | |
Sed12g1342 | Sed-Chr12:10289584 | Sed14g0506 | Sed-Chr14:5016049 | 4.40E-43 | dispersed | |
Sed08g1763 | Sed-Chr8:32482543 | Sed12g1342 | Sed-Chr12:10289584 | 1.60E-42 | transposed | |
Sed12g1342 | Sed-Chr12:10289584 | Sed02g0458 | Sed-Chr2:41804815 | 9.00E-270 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40209 | PF07526 | POX | 3.50E-47 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1342 | - | - | - | 0.0 |