Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1342 ATGGCGACCTACCTTCATGGAAATTCTGAGTTCCAATCTGCAGATGGCGGCCTCCAAACCCTCCTCTTAATGAATCCCAGCTACGCTCAATTCTCCGATGCCCCGCCCCCGCCGCCCGCACCTCCGCCCCACCCTAATCTAGTTTTCTTCAACTCTGTTACGGGTGCTAACACCTTCTCTACACACAATTTGGCTCACGCGCCGCAACAATTTGTCGGTATCCCGCTACAGACGATGGCGATGGCGTCTCCAACGTCACAAGACCACAATTCGTATTCCATGAACACCCACCATGACATCTCCGCCTTGCACGGCTTTGTTCCCCGCGTTCAGCATGATATCTGGAAGCCCATAGACCCATCCACGGCGGCGCGTGAGAATACACGCGCTCCGCAGGGGCTGTCTTTGAGCCTGTCTTCACAGAATCCACCTGGGTTCAGGTCTAGCGATGTTCACTCGCTGAGCCAACAGGCGGTTTCTGGGGAGGAGAATGCGCGAATCTCCGGTGGATCTCCGTCTTCGTGTTCGGGCATCATTAACGGCGTGGCGGGAATTCAGCGCGTGTTGATTAGCTCGAAGTATCTCAAGGCTACACAGCAACTTCTGGATGAAGTTGTTAATGTTACCCAAAACGGAATTAAGAAAGAATTGTCTCCGAAAAAGACCGCCGGAAATCTAAACAAGATGATCGGGGATGTATCTGCAGAGGGCTCTATCGAGGGAGATTCCGACGGTAAACGCGCTGCCGAGATCACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCTTAAGCATGCTAGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCACCAAATGAAGATAGTAATATCTTCATTCGAGCAGGCGGCCGGGGTCGGTTCGGCCAGAACCTACACCGCAGTCGCACTACAAACGATTTCGAAGCAATTCCGCTGCTTAAAAGACGCGATCAGCCGGCAAATCAAAGCAGCAAACAAGAGTTTGGGAGAAGAAGAAAGTGTTGGAAGAAAAACGGAAGGCTCCCGGTTGAAATTCGTGGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAACTGGGCATGATCCAACACAATGCTTGGAGACCTCAAAGAGGCTTACCGGAAAGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACTTGCTCGCTAAACAAGCAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAGGAACAAGAACAGAACGGAGGCGGACCGGCACCGGTGACGGCGGAGGAAAAAAGCGACGACAATTCACCACCGGAAACAAAAAGCCCCAATTCAAAACAAGAAAACTCCCAAAACCAAAACGTACATCCTTCAATTTCAATCTCAACATCCTCCGGTGGAAATATCCGAAACCCATCTGGATTTACCCTCATCGGAACCTCGTCGGAGCTCGACGGAATCACTCAAGGAAGCCCCAAAAAACAGAGAGTACCTGAAATCATCCATTTCTCAAACAACAACAATTTCATAAACATGGACATCAAACCCCAAGAAGAAGATGAACAAACCCAAAATCAAAATCATCACCTTTCCATGAAATTTGATGAAGAAAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGCCGGGTTCGGCCAATACCCAATCGGCGAAATCGGCCGATTCGACGCTGCCGATCAATTCACTCCACGATTCTCCGGCAACAATGGCGTCTCCTTAACTCTGGGCCTTCCCCATTGCGAAAATCTATCTCTAAACTCAGGAACCCACCAAAACTTTCTCCCAAATCAGAGCATCCATTTAGGAAGAAGAACAGACATTGGAAAACCCACTGAATTTTCCGCCATTAACGCCTCTGGAGCTCACTCTTCTACTGCATTTGAAACAATCAACATCCAAAATGGAAAGAGATTTGCAGCTCAGTTACTGCCAGACTTTGTGGCCTAG 2073 49.06 MATYLHGNSEFQSADGGLQTLLLMNPSYAQFSDAPPPPPAPPPHPNLVFFNSVTGANTFSTHNLAHAPQQFVGIPLQTMAMASPTSQDHNSYSMNTHHDISALHGFVPRVQHDIWKPIDPSTAARENTRAPQGLSLSLSSQNPPGFRSSDVHSLSQQAVSGEENARISGGSPSSCSGIINGVAGIQRVLISSKYLKATQQLLDEVVNVTQNGIKKELSPKKTAGNLNKMIGDVSAEGSIEGDSDGKRAAEITTAERQEIQMKKAKLLSMLDEVEQRYRQYHHQMKIVISSFEQAAGVGSARTYTAVALQTISKQFRCLKDAISRQIKAANKSLGEEESVGRKTEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHLLAKQAGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGPAPVTAEEKSDDNSPPETKSPNSKQENSQNQNVHPSISISTSSGGNIRNPSGFTLIGTSSELDGITQGSPKKQRVPEIIHFSNNNNFINMDIKPQEEDEQTQNQNHHLSMKFDEERQNRDGYSFLGQPHFNIAGFGQYPIGEIGRFDAADQFTPRFSGNNGVSLTLGLPHCENLSLNSGTHQNFLPNQSIHLGRRTDIGKPTEFSAINASGAHSSTAFETINIQNGKRFAAQLLPDFVA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10289584 10293057 - Sed0015804.1 Sed12g1342 732298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1342 690 SMART prehox3 183 324 IPR006563 -
Sed12g1342 690 ProSiteProfiles 'Homeobox' domain profile. 369 432 IPR001356 GO:0003677(InterPro)
Sed12g1342 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 477 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed12g1342 690 FunFam BEL1-like homeodomain protein 4 375 437 - -
Sed12g1342 690 Pfam Associated with HOX 189 323 IPR006563 -
Sed12g1342 690 CDD homeodomain 372 433 IPR001356 GO:0003677(InterPro)
Sed12g1342 690 MobiDBLite consensus disorder prediction 443 525 - -
Sed12g1342 690 Pfam Homeobox KN domain 389 428 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed12g1342 690 MobiDBLite consensus disorder prediction 125 173 - -
Sed12g1342 690 MobiDBLite consensus disorder prediction 122 173 - -
Sed12g1342 690 Gene3D - 375 437 - -
Sed12g1342 690 Coils Coil 256 283 - -
Sed12g1342 690 MobiDBLite consensus disorder prediction 467 518 - -
Sed12g1342 690 SMART HOX_1 372 436 IPR001356 GO:0003677(InterPro)
Sed12g1342 690 SUPERFAMILY Homeodomain-like 373 439 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3216 Sed-Chr1:59287834 Sed12g1342 Sed-Chr12:10289584 1.10E-136 dispersed
Sed01g3217 Sed-Chr1:59287834 Sed12g1342 Sed-Chr12:10289584 1.10E-136 dispersed
Sed02g0459 Sed-Chr2:41804815 Sed12g1342 Sed-Chr12:10289584 9.40E-269 dispersed
Sed02g0460 Sed-Chr2:41804815 Sed12g1342 Sed-Chr12:10289584 9.40E-269 dispersed
Sed07g0787 Sed-Chr7:5833243 Sed12g1342 Sed-Chr12:10289584 2.60E-67 dispersed
Sed07g0788 Sed-Chr7:5833243 Sed12g1342 Sed-Chr12:10289584 4.30E-54 dispersed
Sed10g0422 Sed-Chr10:2626412 Sed12g1342 Sed-Chr12:10289584 1.30E-66 dispersed
Sed11g1294 Sed-Chr11:28669622 Sed12g1342 Sed-Chr12:10289584 2.50E-63 dispersed
Sed11g1295 Sed-Chr11:28669622 Sed12g1342 Sed-Chr12:10289584 2.50E-63 dispersed
Sed12g1342 Sed-Chr12:10289584 Sed14g0506 Sed-Chr14:5016049 4.40E-43 dispersed
Sed08g1763 Sed-Chr8:32482543 Sed12g1342 Sed-Chr12:10289584 1.60E-42 transposed
Sed12g1342 Sed-Chr12:10289584 Sed02g0458 Sed-Chr2:41804815 9.00E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40209 PF07526 POX 3.50E-47 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1342 - - - 0.0