Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1374 ATGGATCCGTGCCCTTTTGTGCGTCTCACCGTCGGGAATCTCGCTCTTAAGTTTCCGGTGGCGTCTAAGCCTGCTCGTTCCGTTGTTCATCCTTCTTCCTCGCCGTGTTTTTGTAAAATCAAGTTCAACAAACTCCCCGTGCAAACCGCCGTCGTGCCCTTTATTCAGCCGGAGAATCAGTTTCCCGATAGCCACGCCCCGTTCACGGCGGCGACGTTTCATCTCAGCAAATCCGACCTCGAGAAGCTCGCCGGAAAATCTTTCTTCGCTTCGAAGCCGTGCTTGAAAATCTCAATCTACAGCGGGCGGAGAGGCACGACCTGCGGCGTTGATTCCGGGAGGCTTTTGGGTAAAGTGTCTGTACCGTTGGATCTGGCGGGAACTGAATCTAGGGCAACAGTTTTCCACAATGGGTGGGTTTCAGTAGGGAAAGATTTCAAGGGTTCTTGTGCGCAATTCCATTTGAATGTCAAAGCCGAACCCGACCCGAGATTCGTTTTCCAGTTCGACGGCGAACCGGAATGTAGCCCGCAGGTGTTTCAGATTCAGGGCAATATCAAACAACCGGTTTTCACTTGCAAGTTCAGCTTCAGAACCGGCGACCGGACTCAAAGATCCAGATCACTGCCTATCGAATCAAGCATTTCAAGGGGTTGGCTTAGCTCATTCGGAAGCGAAAGGGAACGCCCAGGAAAGGAGCGGAAGGGTTGGTCCATCACAGTCCACGACCTATCCGGTTCTCCGGTTGCTGCTGCGTCTATGGTCACACCGTTCGTTGCCTCACCAGGTTCCGATCGAGTCAGCCGGTCGAACCCCGGATCGTGGCTGATTCTTCGACCCGGCGAGGGCACATGGAAGCCATGGGGTAGGCTGGAGGCTTGGCGAGAGCGAGGTGGGTCAGACGGATTAGGGTTCCGGTTTGAGCTGATACCGGACACGAACGGTGGGATGAGTGCAGCGGGGATTGTACTAGCGGAGTCGACTCTGAACACAAACAAGGGCGGGAAGTTCGTGATAGACTTGGGTGGAAGGTTGTTGACGCCGGTGAAGTCCTCGACCTCACCGGCGTGCAGCCCGAGGGGCAGCGGGGACTTCGGGTACGGGCTGTGGCCGTATAGTGTGTATAGAGGATTTGTGATGGGGGCAAGTGTGGAAGGGGAAGGGAAATGCAGCAAGCCGAGAGTGGAAGTGAGCGTGCAGCACGTGAGCTGCACGGAAGATGCCGCGGCATTCGTGGCATTGGCAGCGGCCATTGATCTTAGCATGGATGCTTGCAGGCTTTTCTCACAGAGGCTGAGGAAGGAGCTCTGTCAACCGTTGGATCAACTACTCTCGTGA 1338 55.38 MDPCPFVRLTVGNLALKFPVASKPARSVVHPSSSPCFCKIKFNKLPVQTAVVPFIQPENQFPDSHAPFTAATFHLSKSDLEKLAGKSFFASKPCLKISIYSGRRGTTCGVDSGRLLGKVSVPLDLAGTESRATVFHNGWVSVGKDFKGSCAQFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNIKQPVFTCKFSFRTGDRTQRSRSLPIESSISRGWLSSFGSERERPGKERKGWSITVHDLSGSPVAAASMVTPFVASPGSDRVSRSNPGSWLILRPGEGTWKPWGRLEAWRERGGSDGLGFRFELIPDTNGGMSAAGIVLAESTLNTNKGGKFVIDLGGRLLTPVKSSTSPACSPRGSGDFGYGLWPYSVYRGFVMGASVEGEGKCSKPRVEVSVQHVSCTEDAAAFVALAAAIDLSMDACRLFSQRLRKELCQPLDQLLS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11024400 11027009 + Sed0022698.1 Sed12g1374 732330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1374 445 PANTHER OS08G0163500 PROTEIN 1 438 IPR010410 -
Sed12g1374 445 Pfam Protein of unknown function (DUF1005) 1 437 IPR010410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1374 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1755 Sed-Chr3:11600652 Sed12g1374 Sed-Chr12:11024400 7.50E-126 dispersed
Sed04g2141 Sed-Chr4:35594104 Sed12g1374 Sed-Chr12:11024400 1.80E-95 dispersed
Sed09g0130 Sed-Chr9:1006732 Sed12g1374 Sed-Chr12:11024400 5.30E-95 dispersed
Sed11g0034 Sed-Chr11:322567 Sed12g1374 Sed-Chr12:11024400 2.50E-129 dispersed
Sed12g1374 Sed-Chr12:11024400 Sed13g0412 Sed-Chr13:2704921 2.10E-131 dispersed
Sed12g1374 Sed-Chr12:11024400 Sed07g1152 Sed-Chr7:8641055 1.30E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g584 Blo01g01782 . . Bda03g00441 Bpe02g00159 Bpe04g00407 Bma04g00418 Bma01g02567 . . Cma01g01450 Cma09g00617 . . . Cpe06g00476 . . . . . . . . . . . . . . . Cone4ag1261 Cone7ag0882 Cone17ag1146 Cone20ag0581 Lsi04g02313 Csa03g04531 Chy04g00172 . . . Bda11g00817 . . . . . Sed12g1374 Cmo01g01503 Cmo09g00602 . . . Car09g00547 . Cpe02g00499 Bhi09g02549 Tan01g3897 Cmetu04g0381 . Hepe01g2202 Mch11g0751 . Cla11g01463 Cam11g1515 Cec11g1554 Cco11g1549 Clacu11g1679 Cmu11g1496 Cre11g1917 . . . Cme04g00199
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004559 2 1 1 2 2 0 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41