Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1391 ATGATGGCTGTAACCTCCAGCTGCAAGGACGCTGCTCTGGATAATGGGAAATATGTTAGGTACACACCGGAGCAAGTGGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCGCGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTGCTTATGGAGGAAAATGATAGGTTGCAGAAACAGGTCTCGCATCTTGTCTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGTGACCCTAGCCACCACTGACACAAGTTGTGAGTCAGTGGTGACAAGTGGTCAACAGCATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCTCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCACTGGAGTTGCAGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGTCTTCTTGGTTTCGCGATTGCCGCACCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATATATGCAGCTCTATGCTCCTACAACTTTGGCACCAGCTCGTGATTTCTGGCTACTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTTTGTGAAAGATCTCTTAACAATACTCAAAATGGTCCAAGTATGCCTCCCGTGCAAAACTTTGTAAGAGCAGAAAAGCTACCGAGTGGGTATTTGATAAGGCCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTGGAACCTTGGAGTGTGCCTGAGGTGTTGCGGCCATTATATAAGTCATCTACTCTACTTGCTCAGAAGAACACAATGGCGGCTTTACGCTTGTTAAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGTTCTTCGTGCTCTTAGTCAGAGGTTGAGCAGAGGTTTCAACGAAGCAGTTAACGGGTTTACTGACGAGGGATGGTCTTTGCTAGACAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCCCATGGGAAGACAATGATGAATGCAAATATTTCATATTCTAATGGATTCCCATCTATGAGCAACGCAGTGCTTTGTGCTAAAGCATCGATGTTATTACAGAATGTCTCTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCTGACAGCAGTATTGATGCTTACTCAGCTGCTGCATTTAAGACCGGTCAATGTGGTTTACCAGGGTCTCATGCTGGATCTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTATTAAATATGAAAATGTGGGCCACTATCGGGACGATATGCTCATGCCTAATGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAAAACACAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATCGACGCCTCTTTTTCTGACGATGCACCCATTTTACCTTCTGGCTTCCGTATCATTCCTCTTGACTCTGGCATGGATGCTTCGAGTCCTAACCGCACACTTGATCTTGCTTCTGCTCTTGATGTTGGACCTGAAGGGAATAGAGGTTCTGGTGATTATGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTACACCTTCAAGATAATGTAGCAGCAATGGCGCGGCAGTATGTCCGGAGCATTATAGCATCTGTTCAGAGAGTGGCACTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATTCTAACCTTCAGACACCAGCAGGTGCTCCCGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATTTGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAGGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAATATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCACGAATAATGCAGCAGGGCTTCCTCTGTCTTCAAGGGGGTGTCTGTTTATCAAGCATGGGAAGGGCACTATCCTATGAGAAAGCAGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2514 45.31 MMAVTSSCKDAALDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSHLVYENSYFRQQTQNVTLATTDTSCESVVTSGQQHLTPPHPPKDASPSGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWSSWFRDCRTVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEKLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAVLRALSQRLSRGFNEAVNGFTDEGWSLLDNDGIDDVTLLVNMSHGKTMMNANISYSNGFPSMSNAVLCAKASMLLQNVSPAMLIRFLREHRSEWADSSIDAYSAAAFKTGQCGLPGSHAGSFGGQVILPLAQTVEHEEFMEVIKYENVGHYRDDMLMPNDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPEGNRGSGDYAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHSNLQTPAGAPEAQTLARWICQSYRCYLGMELLKNEGRESVLKSLWHHSDAVMCCSLRALPNFTFANQSGLDMLETTLVALQDITLENIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRALSYEKAVAWKVLNEEENAHCICFMFMNWSFV 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11247945 11256211 - Sed0004348.1 Sed12g1391 732347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1391 837 Coils Coil 86 106 - -
Sed12g1391 837 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Sed12g1391 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 837 IPR044830 GO:0003700(InterPro)
Sed12g1391 837 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Sed12g1391 837 Pfam MEKHLA domain 696 836 IPR013978 -
Sed12g1391 837 Gene3D - 195 371 IPR023393 -
Sed12g1391 837 CDD START_ArGLABRA2_like 155 370 - -
Sed12g1391 837 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Sed12g1391 837 SUPERFAMILY Bet v1-like 160 370 - -
Sed12g1391 837 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Sed12g1391 837 CDD bZIP 69 108 - -
Sed12g1391 837 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Sed12g1391 837 Gene3D - 10 83 - -
Sed12g1391 837 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Sed12g1391 837 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Sed12g1391 837 ProSiteProfiles START domain profile. 151 365 IPR002913 GO:0008289(InterPro)
Sed12g1391 837 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1507 Sed-Chr5:28762384 Sed12g1391 Sed-Chr12:11247945 0.00E+00 dispersed
Sed09g1605 Sed-Chr9:39547367 Sed12g1391 Sed-Chr12:11247945 0.00E+00 dispersed
Sed09g1606 Sed-Chr9:39547367 Sed12g1391 Sed-Chr12:11247945 0.00E+00 dispersed
Sed12g1391 Sed-Chr12:11247945 Sed14g1615 Sed-Chr14:24352331 0.00E+00 dispersed
Sed12g1391 Sed-Chr12:11247945 Sed12g1392 Sed-Chr12:11247945 0.00E+00 tandem
Sed12g1391 Sed-Chr12:11247945 Sed05g1506 Sed-Chr5:28762384 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40213 PF01852 START 3.50E-53 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1391 K09338 - csv:101218438 1618.21