Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1392 ATGATGGCTGTAACCTCCAGCTGCAAGGACGCTGCTCTGGATAATGGGAAATATGTTAGGTACACACCGGAGCAAGTGGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCGCGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTGCTTATGGAGGAAAATGATAGGTTGCAGAAACAGGTCTCGCATCTTGTCTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGTGACCCTAGCCACCACTGACACAAGTTGTGAGTCAGTGGTGACAAGTGGTCAACAGCATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCTCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCACTGGAGTTGCAGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGTCTTCTTGGTTTCGCGATTGCCGCACCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATATATGCAGCTCTATGCTCCTACAACTTTGGCACCAGCTCGTGATTTCTGGCTACTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTTTGTGAAAGATCTCTTAACAATACTCAAAATGGTCCAAGTATGCCTCCCGTGCAAAACTTTGTAAGAGCAGAAAAGCTACCGAGTGGGTATTTGATAAGGCCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTGGAACCTTGGAGTGTGCCTGAGGTGTTGCGGCCATTATATAAGTCATCTACTCTACTTGCTCAGAAGAACACAATGGCGGCTTTACGCTTGTTAAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGTTCTTCGTGCTCTTAGTCAGAGGTTGAGCAGAGGTTTCAACGAAGCAGTTAACGGGTTTACTGACGAGGGATGGTCTTTGCTAGACAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCCCATGGGAAGACAATGATGAATGCAAATATTTCATATTCTAATGGATTCCCATCTATGAGCAACGCAGTGCTTTGTGCTAAAGCATCGATGTTATTACAGAATGTCTCTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCTGACAGCAGTATTGATGCTTACTCAGCTGCTGCATTTAAGACCGGTCAATGTGGTTTACCAGGGTCTCATGCTGGATCTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTATTAAATATGAAAATGTGGGCCACTATCGGGACGATATGCTCATGCCTAATGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAAAACACAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATCGACGCCTCTTTTTCTGACGATGCACCCATTTTACCTTCTGGCTTCCGTATCATTCCTCTTGACTCTGGCATGGATGCTTCGAGTCCTAACCGCACACTTGATCTTGCTTCTGCTCTTGATGTTGGACCTGAAGGGAATAGAGGTTCTGGTGATTATGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTACACCTTCAAGATAATGTAGCAGCAATGGCGCGGCAGTATGTCCGGAGCATTATAGCATCTGTTCAGAGAGTGGCACTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATTCTAACCTTCAGACACCAGCAGGTGCTCCCGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATTTGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAGGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAATATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCACGAATAATGCAGCAGGTATCGCTAACGAATCCCATCTTTCCTTACCAATCAATGAATGCCCAAATGAACAGAAATTCTTTAAGTAAATCAAAACCCACCAAGTTTTCCCCCATGAGTGGAATTTAA 2478 45.08 MMAVTSSCKDAALDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSHLVYENSYFRQQTQNVTLATTDTSCESVVTSGQQHLTPPHPPKDASPSGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWSSWFRDCRTVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEKLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAVLRALSQRLSRGFNEAVNGFTDEGWSLLDNDGIDDVTLLVNMSHGKTMMNANISYSNGFPSMSNAVLCAKASMLLQNVSPAMLIRFLREHRSEWADSSIDAYSAAAFKTGQCGLPGSHAGSFGGQVILPLAQTVEHEEFMEVIKYENVGHYRDDMLMPNDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPEGNRGSGDYAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHSNLQTPAGAPEAQTLARWICQSYRCYLGMELLKNEGRESVLKSLWHHSDAVMCCSLRALPNFTFANQSGLDMLETTLVALQDITLENIFDDNGKKTLASEFPRIMQQVSLTNPIFPYQSMNAQMNRNSLSKSKPTKFSPMSGI 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11247945 11256211 - Sed0004348.2 Sed12g1392 732348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1392 825 Coils Coil 86 106 - -
Sed12g1392 825 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Sed12g1392 825 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 791 IPR044830 GO:0003700(InterPro)
Sed12g1392 825 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Sed12g1392 825 Gene3D - 195 371 IPR023393 -
Sed12g1392 825 CDD START_ArGLABRA2_like 155 370 - -
Sed12g1392 825 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Sed12g1392 825 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Sed12g1392 825 CDD bZIP 69 108 - -
Sed12g1392 825 SUPERFAMILY Bet v1-like 160 370 - -
Sed12g1392 825 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Sed12g1392 825 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Sed12g1392 825 Gene3D - 10 83 - -
Sed12g1392 825 Pfam MEKHLA domain 696 791 IPR013978 -
Sed12g1392 825 ProSiteProfiles START domain profile. 151 365 IPR002913 GO:0008289(InterPro)
Sed12g1392 825 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Sed12g1392 825 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1506 Sed-Chr5:28762384 Sed12g1392 Sed-Chr12:11247945 0.00E+00 dispersed
Sed12g1392 Sed-Chr12:11247945 Sed14g1615 Sed-Chr14:24352331 3.00E-296 dispersed
Sed12g1391 Sed-Chr12:11247945 Sed12g1392 Sed-Chr12:11247945 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40214 PF01852 START 3.40E-53 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1392 K09338 - csv:101218438 1517.67