Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1396 ATGTCAGCAACAGATGAACAACCCAAGAAGAAGCAACATAATTCCAGCAAGCGCCCCCTCTACCGCGGCGTTCGTATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGGCAGCCCCGCAAGAAGTCCCGCATTTGGCTGGGCACCTTCTCCACCCCCGAGATGGCTGCTCGAGCCCACGACGTAGCCGCCTTGTCCATCAAAGGCGACTCCGCCATCCTCAACTTTCCTGAACTCGCCCACTCCCTCCCCCGCCCTGTCTCCTTTGACCCTCGAGACGTCCAAGCCGCGGCCGCTAAGGCTGCTCACATGGACTCTATCTCCACTTCCTCCGACTCCGATCACCTCTCTGACCACCTCTCCGAGATCGTCAAGCTCCCCACACTCGACGCCAACTGCGATCATGAATTCCTCCTCCTGGATTCCACCGACCGTTGGGCTTACCCGCCGCCGTGGTTACCCACCACGCAGGACTGCGCCTTCAATTACAACGACATGGGGATTGGAGATACTAATTTCTTCTGGGATTATTGA 534 58.24 MSATDEQPKKKQHNSSKRPLYRGVRMRAWGKWVSEIRQPRKKSRIWLGTFSTPEMAARAHDVAALSIKGDSAILNFPELAHSLPRPVSFDPRDVQAAAAKAAHMDSISTSSDSDHLSDHLSEIVKLPTLDANCDHEFLLLDSTDRWAYPPPWLPTTQDCAFNYNDMGIGDTNFFWDY 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11439726 11440591 - Sed0018946.1 Sed12g1396 732352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1396 177 SMART rav1_2 20 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1396 177 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 CDD AP2 19 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Sed12g1396 177 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677(InterPro)
Sed12g1396 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 120 IPR051032 -
Sed12g1396 177 Pfam AP2 domain 19 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1396 177 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0519 Sed-Chr3:3160158 Sed12g1396 Sed-Chr12:11439726 5.10E-42 dispersed
Sed03g1737 Sed-Chr3:11366227 Sed12g1396 Sed-Chr12:11439726 1.70E-35 dispersed
Sed04g1690 Sed-Chr4:31597154 Sed12g1396 Sed-Chr12:11439726 2.10E-31 dispersed
Sed06g2173 Sed-Chr6:45482245 Sed12g1396 Sed-Chr12:11439726 5.90E-38 dispersed
Sed07g1437 Sed-Chr7:11115421 Sed12g1396 Sed-Chr12:11439726 8.10E-36 dispersed
Sed09g0555 Sed-Chr9:5829747 Sed12g1396 Sed-Chr12:11439726 5.90E-31 dispersed
Sed11g1821 Sed-Chr11:33024469 Sed12g1396 Sed-Chr12:11439726 8.40E-23 dispersed
Sed12g1396 Sed-Chr12:11439726 Sed12g1829 Sed-Chr12:29557891 2.40E-41 dispersed
Sed12g1396 Sed-Chr12:11439726 Sed03g1479 Sed-Chr3:9448969 6.20E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40217 PF00847 AP2 1.90E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1396 K09286 - csv:101217333 218.779