Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1409 ATGAAGAGAAAATGGGAAGACACACAAGGAGAAAACTTCAATTCTCCCGTTGATATCGAGCTTCATCTTGAGACTCCATTACCTTTGGAGTGGCAACAATGCCTCGATATTCAGTCAGGGCAAATACACTTCTATAACACGAAGACCCAGAAGCGAACCTCCATGGATCCAAGGAGAAATCTATTGGAGCCTCCTAATAGTGGGGATTTTTTGAGCTTGGACCTTGAGCTCAATCTAAATGGTCAATCAAAGAAGAAGAGCAATGGGGTTATTGGGGGTGCTTCATGGCTAAGATTGGAAAGAGAGGAACAAGTAATGGTTGCCAAAGTTTGCATGCAGTGTCACTTATTGGTTATGCTTTTAAAGTCCTCACCCATATGTCCCAATTGCAAATTCATACATCCATTGCAAACCCCTCCAACTACAACTTTGTTTATAGCCTCTCATCCTTCTAATGATAATCAAGCTCAGTCCTTGAAAGGTTTCCCAAACCCTATTCAAAATAAAGTATAA 513 40.94 MKRKWEDTQGENFNSPVDIELHLETPLPLEWQQCLDIQSGQIHFYNTKTQKRTSMDPRRNLLEPPNSGDFLSLDLELNLNGQSKKKSNGVIGGASWLRLEREEQVMVAKVCMQCHLLVMLLKSSPICPNCKFIHPLQTPPTTTLFIASHPSNDNQAQSLKGFPNPIQNKV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11541008 11541910 - Sed0024849.1 Sed12g1409 732365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1409 170 Gene3D - 22 63 - -
Sed12g1409 170 PANTHER BOMB/KIRA PROTEINS 2 59 IPR051105 -
Sed12g1409 170 SUPERFAMILY WW domain 25 60 IPR036020 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1409 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0017 Sed-Chr7:523193 Sed12g1409 Sed-Chr12:11541008 1.60E-14 dispersed
Sed09g0468 Sed-Chr9:4528701 Sed12g1409 Sed-Chr12:11541008 5.00E-10 dispersed
Sed04g0140 Sed-Chr4:961819 Sed12g1409 Sed-Chr12:11541008 1.90E-31 transposed
Sed12g1409 Sed-Chr12:11541008 Sed04g0530 Sed-Chr4:3936909 3.20E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g403 . . . Bda03g00491 Bpe02g00104 Bpe04g00447 . . Cmo05g00521 Cmo12g00120 Cma01g01427 Cma09g00645 . Car12g00144 Sed12g1409 Cpe06g00505 Cpe07g00131 Bhi04g00753 Tan02g2385 Cmetu04g1514 . Hepe10g0502 . Lcy13g1567 Cla08g01105 Cam08g1558 Cec08g1132 Cco08g1258 Clacu08g1260 . Cre08g1042 Cone4ag1342 Cone7ag1589 Cone17ag1221 Cone20ag0502 Lsi04g02344 Csa03g04565 . Cme03g01868 Blo17g00121 . . Bda13g01404 . Bpe14g00451 . Bma02g00144 . Cmo01g01475 Cmo09g00628 Cma12g00155 Cma05g00498 Car05g00446 Car09g00572 Cpe11g00436 . . . . . . . . Cla11g01495 Cam11g1551 Cec11g1583 Cco11g1579 Clacu11g1709 Cmu11g1528 Cre11g1944 Lsi08g00961 Csa02g02146 Chy03g01372 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002186 2 2 1 2 3 1 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 1 3 2 1 63