Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1412 ATGGAAAGAAAATCAGATTTCTCTCCTTGTGGTTTCATGAAAGGGATTTTCCAGCGACGATGCAAATGGCTGAAGAAATCCTCTGTTCATTCCTTACCCACAAACAACACTGAAAATGTCAACCTCAAACAACCCAAAACTGATAACCCAACGACGCAAAATCGAATCTCTGTTTCTGATGATGTCTCAGCCAAAACCCCAGCTGAGAAAGATCAAAAGAATCCTAAAAAACCAATTTTGGATCAACCAAGAACTTCAATTTCTCAGCCAAAGACTCAAAGTCGAAGGATTTCTGATGCTGCAAGAAGCTCCACATCGTCCTCTAATGGCTCTGCGCAAGCCAGAGCCATGAATTCTCAGCAACAATTCAACGAACCCAAATCCCAAATCCGAACATCTTTGGGCAATTTGAAGCCAATTGGATGTGGGAATTTGTCGGCAAACAACAGTCCACGCCTTGAAACTGGTAATTTGGGTTATGTTTCAAAGAATTTGAATTCAAGTCCAAAACTTGGAGGAAATTGCAACATGGGGAACATCAAGAGGAGAAATTCCTATGAATTTCGACAATTTCAAGGTGGGAATTGTAGATTAGAGCCGGATGTTTTGAAATCCATGGGAAATGAGGCTTACACACAGGGGAAATATGAAGAAGCATTGGCCTTTTATGACAGAGCAATAGCTTTAGATTCAGAAAATCCTGTTTATTTCAGCAACAAAGGAGCTGCTTTGATTGGCTTAGATCGTTTAATGGAAGCCATTGATGAATGCAAAAAGGCACTAAAGATTCAGCCTTCTTATCAAAGAGCGCATCATCGTTTAGCCACAACCTATCTCAGAATTGGAGATCCTGAGAAAGCATTGGATCACTTGGAGCAATCTGGCGCTTACGGCGAGAAAACCGACATCGAAAAAGCTCGAGCTCTTCGGAGTTGCTTGAATAAGTGTATTGAAGCAAGGAAGTTGCAAGAATGGGAAACTCTGTTGAAAGAGACCAAATATGCAATTTCCTCTGTTTCTAATTCAGCTTATAAACTCTATGCTTTGCAAGCTGAGGCCTTGTTGAAACTCAATAGACATCAAGAGGCTTATGCTATTTACCAAAAGGGTCAAACCCTCAAAACTAGATCTCTAACTAAGTCATTTAGTGTAGCTGATAGTGCACTTATTTTATCCATTGAGGCACAAGTTTACATGACAATGGGCAGGTTTGAGGAGGCAGTGGCAGCAGCAGAACAATCAACACAGCTTGATTTAACCAATAGGGAGGCCAGTAGGGTGGCAAAATGGGCTAAAGTAGTTTCATCAGCTAGATTGAGAGGCAATTTACTTTTCAAGGAATCAAGATTTTCAGAAGCCTGCATTGCATACAGTGAGGGACTAGAAAACAACCCCAGTAACTCGATTTTTTTATGCAACCGAGCAGCGTGTCGATCAAAGCTCGGGCAGTATGAAAAAGCTGTTGAAGATTGCACTGCAGCTCTTGAGGCACAGCCATGCTACAGCAAAGCCAGACTCCGCAGGGCTGATTGTAATGCTAAAATGGAAAGATGGGAGGCTTCAATTCAAGATTATGAGGTGTTGATTAGGGAGACACCAGGGAATGAGGAAGTGGGGAGGGCACTGTTTGAGGCACAGCTCCAATTCAGAAAGCAACATGGGGAAGATGTCAAAGACTTGAAATTTGGTTCTAATTTGGTTTCTATTTCTAGCTATGACCGTTTTAGGCACTTTGTTACTTCTCCTGGGATGTCAGTGGTCTGGTTTTGCAACAAAAGCTACCATAAACATGAACTAGAAGTCTTTGAGCAAGTTTACAAGCAGTTTCCATCGGTCAATTTTCTCAAGGTGGAGATAGAAGAACATCCTTATTTGGCAAAGTTGGAGAATGTGAGCACAATTCCAGCTTTTAAAATATACAGAAATGGAACAATAGTGAAGGAGATTCCAGCCTCTAAACCCCATTCATTAGAAACTTTTGTGAAGTTGTACAGCAGTTGA 2001 41.38 MERKSDFSPCGFMKGIFQRRCKWLKKSSVHSLPTNNTENVNLKQPKTDNPTTQNRISVSDDVSAKTPAEKDQKNPKKPILDQPRTSISQPKTQSRRISDAARSSTSSSNGSAQARAMNSQQQFNEPKSQIRTSLGNLKPIGCGNLSANNSPRLETGNLGYVSKNLNSSPKLGGNCNMGNIKRRNSYEFRQFQGGNCRLEPDVLKSMGNEAYTQGKYEEALAFYDRAIALDSENPVYFSNKGAALIGLDRLMEAIDECKKALKIQPSYQRAHHRLATTYLRIGDPEKALDHLEQSGAYGEKTDIEKARALRSCLNKCIEARKLQEWETLLKETKYAISSVSNSAYKLYALQAEALLKLNRHQEAYAIYQKGQTLKTRSLTKSFSVADSALILSIEAQVYMTMGRFEEAVAAAEQSTQLDLTNREASRVAKWAKVVSSARLRGNLLFKESRFSEACIAYSEGLENNPSNSIFLCNRAACRSKLGQYEKAVEDCTAALEAQPCYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAQLQFRKQHGEDVKDLKFGSNLVSISSYDRFRHFVTSPGMSVVWFCNKSYHKHELEVFEQVYKQFPSVNFLKVEIEEHPYLAKLENVSTIPAFKIYRNGTIVKEIPASKPHSLETFVKLYSS 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11676245 11680960 + Sed0025375.1 Sed12g1412 732368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1412 666 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 Pfam Tetratricopeptide repeat 257 288 - -
Sed12g1412 666 Pfam Tetratricopeptide repeat 457 488 - -
Sed12g1412 666 MobiDBLite consensus disorder prediction 28 126 - -
Sed12g1412 666 Pfam Tetratricopeptide repeat 395 419 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 434 467 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 268 301 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 388 421 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 200 233 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 234 267 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 502 535 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 344 377 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SMART tpr_5 468 501 IPR019734 GO:0005515(InterPro)
Sed12g1412 666 SUPERFAMILY TPR-like 200 422 IPR011990 GO:0005515(InterPro)
Sed12g1412 666 Gene3D Tetratricopeptide repeat domain 199 551 IPR011990 GO:0005515(InterPro)
Sed12g1412 666 Pfam Thioredoxin 601 661 IPR013766 -
Sed12g1412 666 CDD TRX_family 575 662 - -
Sed12g1412 666 Pfam TPR repeat 207 244 - -
Sed12g1412 666 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 657 IPR044534 GO:0005737(PANTHER)
Sed12g1412 666 MobiDBLite consensus disorder prediction 79 126 - -
Sed12g1412 666 Gene3D Glutaredoxin 552 664 - -
Sed12g1412 666 MobiDBLite consensus disorder prediction 28 61 - -
Sed12g1412 666 SUPERFAMILY TPR-like 437 551 IPR011990 GO:0005515(InterPro)
Sed12g1412 666 SUPERFAMILY Thioredoxin-like 557 661 IPR036249 -
Sed12g1412 666 MobiDBLite consensus disorder prediction 64 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1412 K09527 - - csv:101206173 990.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2882 Sed-Chr3:46019748 Sed12g1412 Sed-Chr12:11676245 8.40E-08 dispersed
Sed12g1412 Sed-Chr12:11676245 Sed13g0951 Sed-Chr13:7204286 2.80E-87 dispersed
Sed12g1412 Sed-Chr12:11676245 Sed07g1740 Sed-Chr7:16688127 9.70E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39