Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1415 ATGAGAGGCAGAACAAAGGACACAAGAATTTGTCTAGCAATCTTAAGGTATAAAACCAGTCATTCTTTGTGTTTTCTTAACAACCTTGCTGATAAATTGACAGTTAAAATGAGTGACAAAAGAGAGAATTCAACTGATAACTCGAAACTCGAAACAAAGGAGATAGATGAGCGATACATTCACAGAGTTGCAGTTCCACCAAAGCAGAAACTTCTCACAGAAATCAAGTCTGGAGTGAAAGAAACATTTTTCCCTGATGACCCTCTAAGATCATTCAAGGATCAATCGAAGAGGCGCAAATTGATTCTCGGCATCCAGGCTGTTTTCCCGATACTCAATTGGGGAAGAAGTTACAATTTGACTAAGCTTAGAGGAGATATTATTGCTGGATTCACCATTGCTAGTCTCTGCATTCCACAGGATATTGGGTATGCAAACCTTGCAAATTTGCCTCCAGAGTATGGATTGTACTCCAGTTTTGTTCCACCATTAATCTATGCAGTTATGGGTAGCTCGAGAGATATCGCCATTGGCCCGGTCGCTGTCGTTTCGCTCTTGTTGGGGACATTGCTTCAAGAGGAAGTTGATTTTGCTACAAATGCCGAAGAATACAGGCGGCTTGCTTTTACAGCTACATTCTTTGCAGGGATCACACAAACCACCCTTGGAGTTCTGAGGTTGGGATTCCTAATTGATTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAGCAACTCAAAGGCTTTCTTGGCATAAAGAAGTTCACAAAGAAAACAGATATTATCTCTGTTATGCATTCCGTATTTGGCACGATGCGACACGGATGGAACTGGCAAACAATAGCAATTGCTGCAACCTTCCTTTGCTTTCTTCTATTTGCAAAATTCATGGGGAAGAAGAACAAGAAGCTCTTCTGGCTGCCTGCAGTTGCTCCACTCATATCTGTTGTTCTGTCTACCCTTTTGGTTTACCTTACTCGTGCAGATAATCAAGGGGTTGCGATTGTGAGGCACATAGAGAAAGGAATCAATCCCTCATCTGTGAAAGACTTGTATTTATCAGGCCAACACGTTCTAAAAGGGTTGAAGATCGGTATCGTGGCGGGAATGATAGCGTTGACGGAAGCCATTGCGATTGGAAGAACGTTTGCTTCAATGAAAGACTATCAAATTGATGGAAACAAGGAAATGGTGGCAATGGGAGTCATGAATGTTATTGGTTCAATGTCTTCCTGCTATGTAGCAACAGGTTCATTTTCTCGATCCGCCGTAAATTACATGGCTGGCTGCCAAACAGCAGTCTCCAACATTGTAATGTCCATTGTAGTACTCTTAACTTTGGCTTTCATCACCCCACTTTTCAAATATACTCCGAATGCGATTCTGTCTGCTATCATTATATCCGCCGTGATCAACCTGATCGACTTGCACGCAGCAAAGTTGATATGGAAGATCGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCTTTGGAGTCATCTTTTTCTCGGTTGAGATAGGTCTACTCGTTGCGGTATGCATTTCCTTTGCCAAAATCCTTCTTCAAGTTACCAGACCAAGGACTGCAATTCTTGGAAAGATCCCGAGGTCGACCGTTTACCGAAACATACTGCAATATCCCGATGCAACCAAAGTTCCAGGGATCTTGATTGTGAGAGTTGATTCAGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAATTAAGGAAAAAATCCTACCAGAACAAAATCCAGTTTTTAATAGTTGAAATGTCACCTGTTACTGACATAGACACCAGTGGCATACATGCTTTGGAAGAGCTAAATGGAAGTCTCAAGAAAAGAGAAATTCAGCTGATTCTGGCGAATCCGGGTCCGGTGGTGATCCACAAGCTTCACACATCAGAGTTTGCAGATTTGATAGGCCAAGACAATATCTTTCTTACAGTAGGTGATGCAGTCTCATCTTGTACTCCAAAGATAATAAACGACGTTTGA 2061 42.07 MRGRTKDTRICLAILRYKTSHSLCFLNNLADKLTVKMSDKRENSTDNSKLETKEIDERYIHRVAVPPKQKLLTEIKSGVKETFFPDDPLRSFKDQSKRRKLILGIQAVFPILNWGRSYNLTKLRGDIIAGFTIASLCIPQDIGYANLANLPPEYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQEEVDFATNAEEYRRLAFTATFFAGITQTTLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMHSVFGTMRHGWNWQTIAIAATFLCFLLFAKFMGKKNKKLFWLPAVAPLISVVLSTLLVYLTRADNQGVAIVRHIEKGINPSSVKDLYLSGQHVLKGLKIGIVAGMIALTEAIAIGRTFASMKDYQIDGNKEMVAMGVMNVIGSMSSCYVATGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFITPLFKYTPNAILSAIIISAVINLIDLHAAKLIWKIDKFDFVACMGAFFGVIFFSVEIGLLVAVCISFAKILLQVTRPRTAILGKIPRSTVYRNILQYPDATKVPGILIVRVDSAIYFSNSNYIKERILRWLVDEEELRKKSYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVIHKLHTSEFADLIGQDNIFLTVGDAVSSCTPKIINDV 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11758550 11762901 + Sed0006762.1 Sed12g1415 732371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1415 686 CDD STAS_SulP_like_sulfate_transporter 556 671 - -
Sed12g1415 686 Pfam Sulfate permease family 123 504 IPR011547 GO:0016020(InterPro)
Sed12g1415 686 Coils Coil 591 611 - -
Sed12g1415 686 ProSitePatterns SLC26A transporters signature. 152 173 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed12g1415 686 Gene3D STAS domain 535 681 IPR036513 -
Sed12g1415 686 Pfam STAS domain 556 674 IPR002645 -
Sed12g1415 686 FunFam Sulfate transporter 31 535 681 - -
Sed12g1415 686 ProSiteProfiles STAS domain profile. 555 678 IPR002645 -
Sed12g1415 686 PANTHER SULFATE TRANSPORTER 84 678 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1415 686 SUPERFAMILY SpoIIaa-like 557 678 IPR036513 -
Sed12g1415 686 NCBIfam sulfate permease 110 674 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0853 Sed-Chr3:5181786 Sed12g1415 Sed-Chr12:11758550 1.40E-296 dispersed
Sed03g0854 Sed-Chr3:5181786 Sed12g1415 Sed-Chr12:11758550 1.40E-296 dispersed
Sed06g0944 Sed-Chr6:12421202 Sed12g1415 Sed-Chr12:11758550 1.00E-243 dispersed
Sed06g0945 Sed-Chr6:12433428 Sed12g1415 Sed-Chr12:11758550 8.40E-50 dispersed
Sed07g1733 Sed-Chr7:16184139 Sed12g1415 Sed-Chr12:11758550 3.30E-181 dispersed
Sed12g1415 Sed-Chr12:11758550 Sed12g1857 Sed-Chr12:29818860 1.30E-159 dispersed
Sed12g1415 Sed-Chr12:11758550 Sed09g1100 Sed-Chr9:34958780 3.80E-196 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1415 K17470 - csv:101207370 1115.91