Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1433 | ATGGCAGCTGCCATGGATTTCTACAATGAAGGACCTCAAACCGACCACTTTGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCCGCTTCTTCCCCTCTCTCTACCAATTTATCATCATCATCTTTTTCTTCTTCACCAACACCTTCTTATCCTTTCTCTCAACAGTCCACTTTGTACCCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCCACCCAAAACCTCATTGGGTTTGAACAGCCGTTTACAATTGGACCCCATCAGTTATCAACACCTCAAATTCTCCCTTCTCAACCTCACTTCAATCTTCTTCAAAACCAAACCCCACAAGCTTTTGCTTGGGGGCAACCACCACTTTGCTATGAACAACAAACGCCCAGCTTCCTCACCCCCAAGCCAATCCCAATGAAGCAACTGGGTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTACGGCAGCGGCATTGGGGGAAATGGGTGGCCGAGATTCGACTACCGAGAAACCGAACTCGGCTCTGGCTCGGCACCTTCGACACGGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGATTAAATTTCCCCCACCTCAAGCACCAAGGATCCTGTGTTGAAGGCGAATTTGGTGAGTATAAGCCTCTACAGTCCTCAGTGGATGCAAAGCTCCAAGCAATTTGTGAAAACATGGCCAAGCCACAGAAACAATGCAACTCAAAAAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTCACAGAGAGCGATGGGTCTGCAGCATCTTCCCCTTTATCGGATCTTACATTCCCTGACTTCACAGAGTTGCCATGGATTCAGAATCAAGCTTGGGAGAACTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCATTATTACCTTAA | 1020 | 47.94 | MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSPLSTNLSSSSFSSSPTPSYPFSQQSTLYPNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHQLSTPQILPSQPHFNLLQNQTPQAFAWGQPPLCYEQQTPSFLTPKPIPMKQLGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCVEGEFGEYKPLQSSVDAKLQAICENMAKPQKQCNSKKPVTAAKKSRSQSCSAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELPWIQNQAWENSMLEKYPSEIDWASLLP | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11968969 | 11970851 | + | Sed0016893.1 | Sed12g1433 | 732389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1433 | 339 | CDD | AP2 | 159 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | Pfam | AP2 domain | 160 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | ProSiteProfiles | AP2/ERF domain profile. | 160 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | Gene3D | AP2/ERF domain | 160 | 218 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | PRINTS | Ethylene responsive element binding protein signature | 161 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | PRINTS | Ethylene responsive element binding protein signature | 183 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | FunFam | Ethylene-responsive transcription factor 2 | 159 | 218 | - | - | |
Sed12g1433 | 339 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 337 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Sed12g1433 | 339 | SMART | rav1_2 | 160 | 223 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1433 | 339 | SUPERFAMILY | DNA-binding domain | 160 | 218 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3818 | Sed-Chr1:67371957 | Sed12g1433 | Sed-Chr12:11968969 | 4.20E-27 | dispersed | |
Sed04g0131 | Sed-Chr4:867807 | Sed12g1433 | Sed-Chr12:11968969 | 2.80E-83 | dispersed | |
Sed05g1951 | Sed-Chr5:32866141 | Sed12g1433 | Sed-Chr12:11968969 | 2.50E-27 | dispersed | |
Sed05g3138 | Sed-Chr5:41461014 | Sed12g1433 | Sed-Chr12:11968969 | 1.70E-28 | dispersed | |
Sed10g0864 | Sed-Chr10:6490632 | Sed12g1433 | Sed-Chr12:11968969 | 2.80E-58 | dispersed | |
Sed12g1433 | Sed-Chr12:11968969 | Sed14g1054 | Sed-Chr14:20095632 | 7.80E-49 | dispersed | |
Sed12g1433 | Sed-Chr12:11968969 | Sed04g0519 | Sed-Chr4:3844151 | 6.70E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40218 | PF00847 | AP2 | 2.50E-15 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1433 | K09286 | - | csv:101214560 | 529.635 |