Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1433 ATGGCAGCTGCCATGGATTTCTACAATGAAGGACCTCAAACCGACCACTTTGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCCGCTTCTTCCCCTCTCTCTACCAATTTATCATCATCATCTTTTTCTTCTTCACCAACACCTTCTTATCCTTTCTCTCAACAGTCCACTTTGTACCCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCCACCCAAAACCTCATTGGGTTTGAACAGCCGTTTACAATTGGACCCCATCAGTTATCAACACCTCAAATTCTCCCTTCTCAACCTCACTTCAATCTTCTTCAAAACCAAACCCCACAAGCTTTTGCTTGGGGGCAACCACCACTTTGCTATGAACAACAAACGCCCAGCTTCCTCACCCCCAAGCCAATCCCAATGAAGCAACTGGGTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTACGGCAGCGGCATTGGGGGAAATGGGTGGCCGAGATTCGACTACCGAGAAACCGAACTCGGCTCTGGCTCGGCACCTTCGACACGGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGATTAAATTTCCCCCACCTCAAGCACCAAGGATCCTGTGTTGAAGGCGAATTTGGTGAGTATAAGCCTCTACAGTCCTCAGTGGATGCAAAGCTCCAAGCAATTTGTGAAAACATGGCCAAGCCACAGAAACAATGCAACTCAAAAAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTCACAGAGAGCGATGGGTCTGCAGCATCTTCCCCTTTATCGGATCTTACATTCCCTGACTTCACAGAGTTGCCATGGATTCAGAATCAAGCTTGGGAGAACTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCATTATTACCTTAA 1020 47.94 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSPLSTNLSSSSFSSSPTPSYPFSQQSTLYPNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHQLSTPQILPSQPHFNLLQNQTPQAFAWGQPPLCYEQQTPSFLTPKPIPMKQLGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCVEGEFGEYKPLQSSVDAKLQAICENMAKPQKQCNSKKPVTAAKKSRSQSCSAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELPWIQNQAWENSMLEKYPSEIDWASLLP 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11968969 11970851 + Sed0016893.1 Sed12g1433 732389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1433 339 CDD AP2 159 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 Pfam AP2 domain 160 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Sed12g1433 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 337 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed12g1433 339 SMART rav1_2 160 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1433 339 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3818 Sed-Chr1:67371957 Sed12g1433 Sed-Chr12:11968969 4.20E-27 dispersed
Sed04g0131 Sed-Chr4:867807 Sed12g1433 Sed-Chr12:11968969 2.80E-83 dispersed
Sed05g1951 Sed-Chr5:32866141 Sed12g1433 Sed-Chr12:11968969 2.50E-27 dispersed
Sed05g3138 Sed-Chr5:41461014 Sed12g1433 Sed-Chr12:11968969 1.70E-28 dispersed
Sed10g0864 Sed-Chr10:6490632 Sed12g1433 Sed-Chr12:11968969 2.80E-58 dispersed
Sed12g1433 Sed-Chr12:11968969 Sed14g1054 Sed-Chr14:20095632 7.80E-49 dispersed
Sed12g1433 Sed-Chr12:11968969 Sed04g0519 Sed-Chr4:3844151 6.70E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40218 PF00847 AP2 2.50E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1433 K09286 - csv:101214560 529.635