Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1436 ATGGATTTTCGCCATACCCAGTCGGATCTCTCTTTAGGGTTTAACACCCACGCCACATCCTCCATATCTAGAACTTCGACTGGAGACAACTCCAGCTATTTGTGTTCTACGGCTTCCAATTCCTCGTACGAGAAATTCGATTTTGTTAATGGGGATGCCAGCGATCATAGCCACGACCAGAAATTTAGCCTCCTAGGGCAACCATTGCGCGTGAAGAGAAAGAGAGACATTCAATCGTTTCTCAATCAGGATGCTGCAAAATGGGTAGCGGTTGCGGATGAATCAGGCCTCGAGACGAGACGGGCTTCGGTTAGGGCATGGGGGAACCAGCCGCTTCGGATTGCTGATCCGGAAATTCATGATATCATGGCCAAGGAGAAGCGGAGGCAATTCAGGGGAATTGAGTTAGTTGCCTCGGAGAATTTTGTGTGCAGGGCTGTGATGGAAGCCCTAGGTAGCCATTTGACGAATAAGTATTCTGAGGGAATGCCTGGTTCCAGATACTATACGGGTAATCAGCACATAGATGAGATTGAATTGCTTTGCTGTGAGAGAGCGTTGGCTGCTTTTGATCTTGATTCTGAGAAATGGGGTGTGAATGTTCAACCTTATTCTTGTACATCGGCAAATTTTGCTGTGTACACAGGTCTTTTGCTCCCAAAGGATCGGATTATGGGTTTGGATTCAGCATCTGGAGGACATCTTAGTCATGGATATTATACACCTAGTGGGAAGAAGATTTCAGCGACTTCTATATTCTATGAGAGTCTACCTTATAAAGTCAACCCCTTAACTGGGTATGTCGACTATGATAAGCTTGAGGAGAAGGCACTCGATTATCGTCCGAAAATACTCATCTGTGGAGGAAGCTCGTATCCACGCGAGTGGGACTATGCTCGGTGTAGACGGATTGCAGACAAATGTGGAGCTGTTCTGATGTGTGACATGGCTCATATAAGCGGTCTTGTTGCAGCCAAGGAATGCGCTAGTCCGTTCCAATATTGTGATATAGTAACTTCAACAACACACAAAAGTCTCAGAGGGCCCAGAGGCGGCATTATCTTTTTCAGGAGGGGTATAAAATCAAGGAAGCAAGGCGTGCTTCTAAATCATGGAGATGTAACTGGTACTTATGACTTTGAGGACAGGATAAACTTCTCTGTTTTCCCGTCGTTACAAGGGGGTCCCCATAATAATCATATTGCTGCACTGGCCATAGCGTTAAAACAAGTGGCTTCTCCTGAATACAGAGTCTATATTCGACAGGTGAAGAAAAATGCGCAGGCCTTAGCATCGGCTTTATTGAGAAGAAAATGCAGATTGGTAACTGATGGTACAGACAATCATTTAGTGCTGTGGGATCTTACTCCTTTGAGACTAACGGCCAAGAATTATGAGAAGATCTGTGAGCTATGCCATATTACAGTCAACAAGTGTGCCATCTACGGTGACAATGGAGCCATTTCTCCTGGAGGTGTGAGAATAGGCACTCCTGCAATGACAACCAGAGGTTGTCTAGAGGCTGATTTCGAGACAATAGCTGAGATTCTTCTTAAAGCAGCCCATATCACAAAAATGGTTCTTCATAGTGAACATGGAAAACTGCATAAAGATATCATGAAGAATTTTCAAAACAACAAAGATGTTGTAGAGCTTCGGAACCGGGTTGAGGCGTTTGCCGCTTCCTTCGCAATGCCAGGATTTGATATATGA 1713 44.89 MDFRHTQSDLSLGFNTHATSSISRTSTGDNSSYLCSTASNSSYEKFDFVNGDASDHSHDQKFSLLGQPLRVKRKRDIQSFLNQDAAKWVAVADESGLETRRASVRAWGNQPLRIADPEIHDIMAKEKRRQFRGIELVASENFVCRAVMEALGSHLTNKYSEGMPGSRYYTGNQHIDEIELLCCERALAAFDLDSEKWGVNVQPYSCTSANFAVYTGLLLPKDRIMGLDSASGGHLSHGYYTPSGKKISATSIFYESLPYKVNPLTGYVDYDKLEEKALDYRPKILICGGSSYPREWDYARCRRIADKCGAVLMCDMAHISGLVAAKECASPFQYCDIVTSTTHKSLRGPRGGIIFFRRGIKSRKQGVLLNHGDVTGTYDFEDRINFSVFPSLQGGPHNNHIAALAIALKQVASPEYRVYIRQVKKNAQALASALLRRKCRLVTDGTDNHLVLWDLTPLRLTAKNYEKICELCHITVNKCAIYGDNGAISPGGVRIGTPAMTTRGCLEADFETIAEILLKAAHITKMVLHSEHGKLHKDIMKNFQNNKDVVELRNRVEAFAASFAMPGFDI 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11984589 11989064 - Sed0023569.1 Sed12g1436 732392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1436 570 CDD SHMT 116 559 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Sed12g1436 570 Gene3D - 141 421 IPR015421 -
Sed12g1436 570 Pfam Serine hydroxymethyltransferase 114 516 IPR039429 -
Sed12g1436 570 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 98 569 IPR049943 GO:0004372(PANTHER)|GO:0005737(PANTHER)|GO:0006565(PANTHER)|GO:0006730(PANTHER)|GO:0008270(PANTHER)|GO:0019264(PANTHER)|GO:0030170(PANTHER)|GO:0046653(PANTHER)|GO:0046655(PANTHER)|GO:0050897(PANTHER)|GO:0070905(PANTHER)
Sed12g1436 570 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 336 352 IPR019798 GO:0030170(InterPro)
Sed12g1436 570 Gene3D Aspartate Aminotransferase, domain 1 116 566 IPR015422 -
Sed12g1436 570 SUPERFAMILY PLP-dependent transferases 100 569 IPR015424 -
Sed12g1436 570 Hamap Serine hydroxymethyltransferase [glyA]. 111 567 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Sed12g1436 570 FunFam Serine hydroxymethyltransferase 141 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1436 K00600 - - csv:101215287 990.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2081 Sed-Chr4:35119297 Sed12g1436 Sed-Chr12:11984589 7.70E-180 dispersed
Sed09g0172 Sed-Chr9:1397467 Sed12g1436 Sed-Chr12:11984589 2.90E-179 dispersed
Sed12g1436 Sed-Chr12:11984589 Sed13g0535 Sed-Chr13:3687467 2.40E-220 dispersed
Sed12g1436 Sed-Chr12:11984589 Sed04g1602 Sed-Chr4:30778285 1.50E-222 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g340 . Blo12g00691 . Bda03g00512 Bpe02g00085 Bpe04g00468 . Bma01g02633 . . Cma01g01411 . . . . . . . . . . . . . . . . . . . . Cone4ag1365 Cone7ag1566 . . Lsi04g02356 Csa04g01838 . . . . Bda11g00752 Bda13g01409 . . . . Sed12g1436 Cmo01g01461 . . . . . . Cpe02g00532 Bhi09g02629 Tan01g3975 Cmetu07g0508 . Hepe01g2251 Mch11g0798 . Cla11g01508 Cam11g1567 Cec11g1596 Cco11g1594 Clacu11g1723 Cmu11g1543 Cre11g1958 . . Chy07g00694 Cme07g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195