Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1459 ATGGGAGCTGAAACTGGGATTGCAATCTTTTGTGAAATGTTTCATAAAATAAAACCCTATTTGGCTATGATTTCCTTGCAATTTGGGTATGCTGGAATGTACATAGTGACTATGCTCTGTCTTAAGAAGGGCATGAACCATTACGTTCTCGCTGTGTATCGACACCTCGTCGCTACTGTTGTCATTTCTCCCTTCGCTTTCTTTTTCGAAAGGAAAATAAGGCCGAAGATGACATTTCCCATCCTTATTCGAATAATGCTCCTCGGCTTTCTCGAGCCCGTGTTGGATCAAAATCTTTACTACGTGGGGTTGAAACTTACGTCAGCAACATTTACCTCTGCCACTGTTAATATTCTCCCTGCTGTAACTTTTATTATGGCTCTCATTTTCAGGCTAGAAAGTGTAAACTTCAAGAAGGTTCGTAGCATTGCGAAGGTGGCAGGAACATTGGTGACGATCGGCGGAGCAATGGCGATGACTCTATACAAAGGACCGGTGGTCGAGATTTTCCACGGCCATGGACGACATGCTGCCCAGCCGAGCAGTAGTGAGTCCGCAGACAAACATTGGGTCCTCGGCACCCTCATGCTCTTGGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCATTCACATTGAAGAAGTACCCGGCGGAATTGTCGTTAACCGCCCTAATATGTGTGGCCGGCACGGTGGAGGGCTCTATTGTGACACTTATTATGGAGCATGACTTTAGTGTGTGGGTCATTGGCTGGGACTCTCGTCTTCTTGCCGCTGTTTATACTGGTGTGGTATGCTCAGCACTTGCTTATTTTATACAAGGAGTGGTGATTAGGCAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTCCGTTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATTGGAGCCTTTTTTATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCAATATTTAAACAAAATAACGAGTAAAAAAGGCGCCGCCACCGAATTACCGATCACCGCCGAGCCGGAAACTGCCGTCGCCACCGCAAACGAGCGGTGCTCGTCCAAAGTTCCACCGGCATAA 1131 47.13 MGAETGIAIFCEMFHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHLVATVVISPFAFFFERKIRPKMTFPILIRIMLLGFLEPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALIFRLESVNFKKVRSIAKVAGTLVTIGGAMAMTLYKGPVVEIFHGHGRHAAQPSSSESADKHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICVAGTVEGSIVTLIMEHDFSVWVIGWDSRLLAAVYTGVVCSALAYFIQGVVIRQRGPVFVTSFTPLCMIITAFLGSVVLAEQIHLGSIIGAFFIVMGLYLVVWGKAKDQYLNKITSKKGAATELPITAEPETAVATANERCSSKVPPA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14680027 14683379 - Sed0011355.1 Sed12g1459 732415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1459 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Sed12g1459 376 Pfam EamA-like transporter family 23 144 IPR000620 GO:0016020(InterPro)
Sed12g1459 376 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020(InterPro)
Sed12g1459 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 334 - -
Sed12g1459 376 PANTHER WAT1-RELATED PROTEIN 21 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3760 Sed-Chr1:66706295 Sed12g1459 Sed-Chr12:14680027 6.30E-68 dispersed
Sed05g2352 Sed-Chr5:35994836 Sed12g1459 Sed-Chr12:14680027 3.60E-180 dispersed
Sed06g1618 Sed-Chr6:40932439 Sed12g1459 Sed-Chr12:14680027 3.00E-30 dispersed
Sed11g1065 Sed-Chr11:26042393 Sed12g1459 Sed-Chr12:14680027 3.20E-62 dispersed
Sed12g1169 Sed-Chr12:7782269 Sed12g1459 Sed-Chr12:14680027 3.80E-95 dispersed
Sed12g1459 Sed-Chr12:14680027 Sed14g0046 Sed-Chr14:593769 9.40E-96 dispersed
Sed12g1459 Sed-Chr12:14680027 Sed12g1460 Sed-Chr12:14680956 3.60E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1459 - - - 0.0