Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1460 ATGGGAGCTGAAACTGGGATTGCAATCTTTTGTGAAATGTTTCATAAAATAAAACCCTATTTGGCTATGATTTCCTTGCAATTTGGGTATGCTGGAATGTACATAGTGACTATGCTCTGTCTTAAGAAGGGCATGAACCATTACGTTCTCGCTGTGTATCGACACCTCGTCGCTACTGTTGTCATTTCTCCCTTCGCTTTCTTTTTCGAAAGGAAAATAAGGCCGAAGATGACATTTCCCATCCTTATTCGAATAATGCTCCTCGGCTTTCTCGAGCCCGTGTTGGATCAAAATCTTTACTACGTGGGGTTGAAACTTACGTCAGCAACATTTACCTCTGCCACTGTTAATATTCTCCCTGCTGTAACTTTTATTATGGCTCTCATTTTCAGGCTAGAAAGTGTAAACTTCAAGAAGGTTCGTAGCATTGCGAAGGTGGCAGGAACATTGGTGACGATCGGCGGAGCAATGGCGATGACTCTATACAAAGGACCGGTGGTCGAGATTTTCCACGGCCATGGACGACATGCTGCCCAGCCGAGCAGTAGTGAGTCCGCAGACAAACATTGGGTCCTCGGCACCCTCATGCTCTTGGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCATTCACATTGAAGAAGTACCCGGCGGAATTGTCGTTAACCGCCCTAATATGTGTGGCCGGCACGGTGGAGGGCTCTATTGTGACACTTATTATGGAGCATGACTTTAGTGTGTGGGTCATTGGCTGGGACTCTCGTCTTCTTGCCGCTGTTTATACTGGTGTGGTATGCTCAGCACTTGCTTATTTTATACAAGGAGTGGTGATTAGGCAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTCCGTTGTTTTGGCTGAGCAAATTCACCTTGGAAGGTATTTTTACTTCCCCTTCCAACTTTTTTTTATCCTCAATCAACACACATAA 996 45.68 MGAETGIAIFCEMFHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHLVATVVISPFAFFFERKIRPKMTFPILIRIMLLGFLEPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALIFRLESVNFKKVRSIAKVAGTLVTIGGAMAMTLYKGPVVEIFHGHGRHAAQPSSSESADKHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICVAGTVEGSIVTLIMEHDFSVWVIGWDSRLLAAVYTGVVCSALAYFIQGVVIRQRGPVFVTSFTPLCMIITAFLGSVVLAEQIHLGRYFYFPFQLFFILNQHT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14680956 14683379 - Sed0011355.2 Sed12g1460 732416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1460 331 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 316 - -
Sed12g1460 331 PANTHER WAT1-RELATED PROTEIN 21 316 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed12g1460 331 Pfam EamA-like transporter family 23 144 IPR000620 GO:0016020(InterPro)
Sed12g1460 331 Pfam EamA-like transporter family 192 317 IPR000620 GO:0016020(InterPro)
Sed12g1460 331 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1460 Sed-Chr12:14680956 Sed14g0046 Sed-Chr14:593769 1.20E-89 dispersed
Sed12g1459 Sed-Chr12:14680027 Sed12g1460 Sed-Chr12:14680956 3.60E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1460 - - - 0.0