Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1498 ATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAGTCTCAATCATCAGAACATGGTGAAAATGCGAGGACAGTCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAGCTTCAGCATGAGTTCAATTCAAATCTTACCCCATTTGTTGAAGAGTCCCATGTCCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAGTCGACACCGACAGAATGATATAGAAGAACAGGCTGCTATACGCATTCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTTTGAAGGGATTGGTTAGACTTCAAGCTCTTGTTAGGGGTCATGCTGTCAGAAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGACGTGTACGAATTGCTTTGGAAAGTGAAACTGCACAGCAACAAATTCAACAACAGCTTGAAAACAAAGCTCGTGTTCGCGAAATTGAAGAAGGTTGGTGCGACAGTGTTGGATCTGTTAAAGAAATTCAAACAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCTATGGCATATGCTCTGGCTCACCAGTGGCAAGCAGGTTCGAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAATCGGTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGCGTGAATGGATCAGCTGAGGGCAAAAGTAACACTAAAGTTCATTCAAAAAACATTGTAAAGAAAACAAACTTTGTGACTGATCACTCAAACCTCTCAAGCCAAAATGCTGCTGCCTCACAATCTGATGGATATGGTTCATCATCACCCACCAAGTCACCTGGGGCGGTAGAGGTATCCACTGCCCAAATTCAAAACCCCAAATATAAGCTTAGACCTGAGAGGCCATTTGAAGAAGTCAAACCTATAGTAGATACTGGTTTGAGGTCCCATAGCAATCCAAAAGAGAGATCCACACCGTTGGTCAAACATGCAAAGAAGCGATTATCCATGCCTAACAATGTTGCAGATCCTGGTAGTCAAAATCAAACAGTGAGAAGTTCGAGATATGCCGGAAAAGTGAACATGACCAAGTCCATCAACGAACCCATGTCGACTTCAAGAGGTGACTCAAAATCTGCAAAACCCAGATTGCATCATTGA 1314 43.23 MGVSGKWFKALVGSKKSEKSQSSEHGENARTVSNKFWHRRKHSVDIDADKLQHEFNSNLTPFVEESHVLSDPEAASIPSDSLQTCDALHSRHRQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQQIQQQLENKARVREIEEGWCDSVGSVKEIQTKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRVNGSAEGKSNTKVHSKNIVKKTNFVTDHSNLSSQNAAASQSDGYGSSSPTKSPGAVEVSTAQIQNPKYKLRPERPFEEVKPIVDTGLRSHSNPKERSTPLVKHAKKRLSMPNNVADPGSQNQTVRSSRYAGKVNMTKSINEPMSTSRGDSKSAKPRLHH 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20358581 20400184 - Sed0020240.1 Sed12g1498 732454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1498 437 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 PANTHER IQ-DOMAIN 5-RELATED 5 405 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 391 428 - -
Sed12g1498 437 Gene3D - 94 149 - -
Sed12g1498 437 ProSiteProfiles IQ motif profile. 98 126 - -
Sed12g1498 437 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 ProSiteProfiles IQ motif profile. 122 149 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 18 34 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 386 437 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 302 344 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 302 355 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 14 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1498 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1171 Sed-Chr8:24136134 Sed12g1498 Sed-Chr12:20358581 2.40E-180 dispersed
Sed10g0264 Sed-Chr10:1532884 Sed12g1498 Sed-Chr12:20358581 2.70E-32 dispersed
Sed12g1498 Sed-Chr12:20358581 Sed13g1870 Sed-Chr13:23712252 4.10E-42 dispersed
Sed12g1498 Sed-Chr12:20358581 Sed08g1170 Sed-Chr8:24136134 8.10E-184 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42