Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1498 ATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAGTCTCAATCATCAGAACATGGTGAAAATGCGAGGACAGTCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAGCTTCAGCATGAGTTCAATTCAAATCTTACCCCATTTGTTGAAGAGTCCCATGTCCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAGTCGACACCGACAGAATGATATAGAAGAACAGGCTGCTATACGCATTCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTTTGAAGGGATTGGTTAGACTTCAAGCTCTTGTTAGGGGTCATGCTGTCAGAAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGACGTGTACGAATTGCTTTGGAAAGTGAAACTGCACAGCAACAAATTCAACAACAGCTTGAAAACAAAGCTCGTGTTCGCGAAATTGAAGAAGGTTGGTGCGACAGTGTTGGATCTGTTAAAGAAATTCAAACAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCTATGGCATATGCTCTGGCTCACCAGTGGCAAGCAGGTTCGAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAATCGGTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGCGTGAATGGATCAGCTGAGGGCAAAAGTAACACTAAAGTTCATTCAAAAAACATTGTAAAGAAAACAAACTTTGTGACTGATCACTCAAACCTCTCAAGCCAAAATGCTGCTGCCTCACAATCTGATGGATATGGTTCATCATCACCCACCAAGTCACCTGGGGCGGTAGAGGTATCCACTGCCCAAATTCAAAACCCCAAATATAAGCTTAGACCTGAGAGGCCATTTGAAGAAGTCAAACCTATAGTAGATACTGGTTTGAGGTCCCATAGCAATCCAAAAGAGAGATCCACACCGTTGGTCAAACATGCAAAGAAGCGATTATCCATGCCTAACAATGTTGCAGATCCTGGTAGTCAAAATCAAACAGTGAGAAGTTCGAGATATGCCGGAAAAGTGAACATGACCAAGTCCATCAACGAACCCATGTCGACTTCAAGAGGTGACTCAAAATCTGCAAAACCCAGATTGCATCATTGA 1314 43.23 MGVSGKWFKALVGSKKSEKSQSSEHGENARTVSNKFWHRRKHSVDIDADKLQHEFNSNLTPFVEESHVLSDPEAASIPSDSLQTCDALHSRHRQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQQIQQQLENKARVREIEEGWCDSVGSVKEIQTKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRVNGSAEGKSNTKVHSKNIVKKTNFVTDHSNLSSQNAAASQSDGYGSSSPTKSPGAVEVSTAQIQNPKYKLRPERPFEEVKPIVDTGLRSHSNPKERSTPLVKHAKKRLSMPNNVADPGSQNQTVRSSRYAGKVNMTKSINEPMSTSRGDSKSAKPRLHH 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20358581 20400184 - Sed0020240.1 Sed12g1498 732454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1498 437 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 PANTHER IQ-DOMAIN 5-RELATED 5 405 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 391 428 - -
Sed12g1498 437 Gene3D - 94 149 - -
Sed12g1498 437 ProSiteProfiles IQ motif profile. 98 126 - -
Sed12g1498 437 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Sed12g1498 437 ProSiteProfiles IQ motif profile. 122 149 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 18 34 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 386 437 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 302 344 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 302 355 - -
Sed12g1498 437 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1171 Sed-Chr8:24136134 Sed12g1498 Sed-Chr12:20358581 2.40E-180 dispersed
Sed10g0264 Sed-Chr10:1532884 Sed12g1498 Sed-Chr12:20358581 2.70E-32 dispersed
Sed12g1498 Sed-Chr12:20358581 Sed13g1870 Sed-Chr13:23712252 4.10E-42 dispersed
Sed12g1498 Sed-Chr12:20358581 Sed08g1170 Sed-Chr8:24136134 8.10E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1498 - - - 0.0