Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1538 ATGGCGGACTACGGCGGCGGCATTTCTCTATCGCACCAGCCACCCAGCCCGGAGTCCTACTCCTCCGACCACAGCCGGCCGTCCAGACCCCAGTCCATCTCCGCCGTGAAGCTCCGCTCCTCCGACGTGGCCAGGAAGCCACGTGGGCGGCCGCCGGGATCGAAGAACAAGCCGAAGGCACCCATAGTGATAACCAAGGAGAGTGAGTCCGGGATGAAGCCCCTCGTGATCGAGATCTCCGCGGGAAACGACGTGGTGGACTCCCTCCTCCACTTCGCCCGGAAACGACATGTCGGCCTCACCGTCCTCTCGGGCTCCGGCTCAGTCTCCAACGTCACCTTGCGACACCCCATGTCGCCTTCCACTTCCCTCTCCCTGCATGGACCTTTCAGCCTCGTTTCTCTCTCTGGCTCTTTTTTCCCCAATACGACCACGCCCTTTACCTCCCCTTCTTTTGGGATTTGCCTTGCCGGCGCTCAAGGTCAGGTGTTTGGAGGCATAGTTGGTGGGAAAGTCACAGCAGCGAGTCTCGTCGTGGTCGTTGCAGCAACATTTACGAACCCGGTGCTCCATCGACTGCCGAGCGAGATGGAGGAGGGAGACGATGTTGATGCGGCGAAACCCGCCATGGATGATGCCAATGAGTCCCCCGCAGTGGCAGCTACGACAAGCTCCGCCACACCGATATCGGTGTGCGTGTACAATGCTCCATCTCCTCCAGATCATGCAATGCCATGGGGTCCGAGCTCTCGAACTTCTTATTGA 765 60.0 MADYGGGISLSHQPPSPESYSSDHSRPSRPQSISAVKLRSSDVARKPRGRPPGSKNKPKAPIVITKESESGMKPLVIEISAGNDVVDSLLHFARKRHVGLTVLSGSGSVSNVTLRHPMSPSTSLSLHGPFSLVSLSGSFFPNTTTPFTSPSFGICLAGAQGQVFGGIVGGKVTAASLVVVVAATFTNPVLHRLPSEMEEGDDVDAAKPAMDDANESPAVAATTSSATPISVCVYNAPSPPDHAMPWGPSSRTSY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24757232 24758246 - Sed0005110.1 Sed12g1538 732494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1538 254 ProSiteProfiles PPC domain profile profile. 69 209 IPR005175 -
Sed12g1538 254 MobiDBLite consensus disorder prediction 1 63 - -
Sed12g1538 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 210 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g1538 254 CDD DUF296 73 170 IPR005175 -
Sed12g1538 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 186 IPR005175 -
Sed12g1538 254 MobiDBLite consensus disorder prediction 12 38 - -
Sed12g1538 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 196 - -
Sed12g1538 254 Gene3D - 72 206 - -
Sed12g1538 254 PIRSF ESCAROLA 9 249 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1538 Sed-Chr12:24757232 Sed12g2108 Sed-Chr12:31776752 1.20E-33 dispersed
Sed12g1538 Sed-Chr12:24757232 Sed08g1129 Sed-Chr8:21961389 4.30E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1538 - - - 0.0