Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1554 ATGTCTCAACCATTTTCACCCAACAAACACTTCTCTCCTTCCCTCTTGAACCCAATTCTCTATCATTCTCACAGAATTCATCAGAGCCTTGGTTGTGAATTGGGTGTTTGTAACAGATCACTGTTGGATTTCTCTCAAGTCTCTTTGCCTTTGGAGGGCCGTAAGCCCAAGAAGCGACCAGCATATGCGAAATTGGCGGTGCGTCTTGAAATGGGCTTTGAGGTTAGTGTTGTTTGTGTTCATGATTTAAATCAAAATTCGAATTTGAATGATGAGGTTAAGAAAAACCTGGAAATACTTCATGGGGTTGCTGGGAATTTGAATGGAACTCTCGAGGGAAGTGAGAGTTTGGATATGAATGTTAATCTCAGTGATGGCTTTGAAGATATTTTGAAAAAGAGCGGCAAGTCTGAGAAGGGTTTTGAAGGAAATGAGAGTTTTTGTGGTTATGAAGATTTCAGAGGCGGTTTTGATTTGAATGAGTGGCTGAATAAAATTGATGGCAGTGAACTTCATGTAATGGACAAAGTTTTGGATCAAGCAATAATAGACCGAGTTTCTGATGAAGAAGTAATACACAAAGTTTTCAATAATGTTGGACTTCAACACAGAATTATGGAATCCGAGTATGAGTATGGCAATTTGCAAGAAGTTCATGCGGATATAAAGGACGAATTGCCAAAAGACAGCTATAGTTTGCGTGGAGATGTGATTATTGAAGCCTCTCTTTGGGCTTCGGATCTTAACTTGAAAGCCATTAGGTCAGAGATTAACAGAAGGTCTTTGGCAGCTGAGCCAGAAATTGTTTGTGATAGAAGTATGAAGTCAAAGGTCTTCAAAAAGAAGATAATCTCAGCAAATTCCTCCATTAATTCTTGTCTGTTAGAGGATAGCATGGATGACATTGACACCACCGACTGGAATAGCGATGAATGCGGTCTGTGCAAAATGGATGGTAGCTTAATATGCTGTGATGGCTGTCCTGCTGCATATCATTTGAAGTGTGTAGGAATAGCCAATGATCTGTTGCCGGAGGGTGACTGGTTTTGTCCTGAGTGTGCCATTGACAGGCACAAGCCCTGGTTGAGAACACCAAAATCACTTCGGGGGGCTGAATTTTTAGGAATGGATCTTCATGGCCGTACATACTTTAGTATCTGTGGCTACCTATTGGTGTTTAGAACTACTGACATTAAAAATGACCAATCTACTTAA 1215 40.49 MSQPFSPNKHFSPSLLNPILYHSHRIHQSLGCELGVCNRSLLDFSQVSLPLEGRKPKKRPAYAKLAVRLEMGFEVSVVCVHDLNQNSNLNDEVKKNLEILHGVAGNLNGTLEGSESLDMNVNLSDGFEDILKKSGKSEKGFEGNESFCGYEDFRGGFDLNEWLNKIDGSELHVMDKVLDQAIIDRVSDEEVIHKVFNNVGLQHRIMESEYEYGNLQEVHADIKDELPKDSYSLRGDVIIEASLWASDLNLKAIRSEINRRSLAAEPEIVCDRSMKSKVFKKKIISANSSINSCLLEDSMDDIDTTDWNSDECGLCKMDGSLICCDGCPAAYHLKCVGIANDLLPEGDWFCPECAIDRHKPWLRTPKSLRGAEFLGMDLHGRTYFSICGYLLVFRTTDIKNDQST 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25180291 25184439 - Sed0017063.1 Sed12g1554 732510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1554 404 CDD PHD2_CHD_II 312 353 - -
Sed12g1554 404 ProSitePatterns Zinc finger PHD-type signature. 312 353 IPR019786 -
Sed12g1554 404 ProSiteProfiles Zinc finger PHD-type profile. 309 356 IPR019787 -
Sed12g1554 404 SMART PHD_3 311 354 IPR001965 -
Sed12g1554 404 SUPERFAMILY FYVE/PHD zinc finger 299 363 IPR011011 -
Sed12g1554 404 Pfam PHD-finger 312 353 IPR019787 -
Sed12g1554 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 373 IPR013083 -
Sed12g1554 404 PANTHER PHD FINGER FAMILY PROTEIN 248 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1554 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3147 Sed-Chr1:56186156 Sed12g1554 Sed-Chr12:25180291 4.00E-26 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004836 1 9 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40221 PF00628 PHD 6.70E-10 CL0390 Sed TR