Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1554 ATGTCTCAACCATTTTCACCCAACAAACACTTCTCTCCTTCCCTCTTGAACCCAATTCTCTATCATTCTCACAGAATTCATCAGAGCCTTGGTTGTGAATTGGGTGTTTGTAACAGATCACTGTTGGATTTCTCTCAAGTCTCTTTGCCTTTGGAGGGCCGTAAGCCCAAGAAGCGACCAGCATATGCGAAATTGGCGGTGCGTCTTGAAATGGGCTTTGAGGTTAGTGTTGTTTGTGTTCATGATTTAAATCAAAATTCGAATTTGAATGATGAGGTTAAGAAAAACCTGGAAATACTTCATGGGGTTGCTGGGAATTTGAATGGAACTCTCGAGGGAAGTGAGAGTTTGGATATGAATGTTAATCTCAGTGATGGCTTTGAAGATATTTTGAAAAAGAGCGGCAAGTCTGAGAAGGGTTTTGAAGGAAATGAGAGTTTTTGTGGTTATGAAGATTTCAGAGGCGGTTTTGATTTGAATGAGTGGCTGAATAAAATTGATGGCAGTGAACTTCATGTAATGGACAAAGTTTTGGATCAAGCAATAATAGACCGAGTTTCTGATGAAGAAGTAATACACAAAGTTTTCAATAATGTTGGACTTCAACACAGAATTATGGAATCCGAGTATGAGTATGGCAATTTGCAAGAAGTTCATGCGGATATAAAGGACGAATTGCCAAAAGACAGCTATAGTTTGCGTGGAGATGTGATTATTGAAGCCTCTCTTTGGGCTTCGGATCTTAACTTGAAAGCCATTAGGTCAGAGATTAACAGAAGGTCTTTGGCAGCTGAGCCAGAAATTGTTTGTGATAGAAGTATGAAGTCAAAGGTCTTCAAAAAGAAGATAATCTCAGCAAATTCCTCCATTAATTCTTGTCTGTTAGAGGATAGCATGGATGACATTGACACCACCGACTGGAATAGCGATGAATGCGGTCTGTGCAAAATGGATGGTAGCTTAATATGCTGTGATGGCTGTCCTGCTGCATATCATTTGAAGTGTGTAGGAATAGCCAATGATCTGTTGCCGGAGGGTGACTGGTTTTGTCCTGAGTGTGCCATTGACAGGCACAAGCCCTGGTTGAGAACACCAAAATCACTTCGGGGGGCTGAATTTTTAGGAATGGATCTTCATGGCCGTACATACTTTAGTATCTGTGGCTACCTATTGGTGTTTAGAACTACTGACATTAAAAATGACCAATCTACTTAA 1215 40.49 MSQPFSPNKHFSPSLLNPILYHSHRIHQSLGCELGVCNRSLLDFSQVSLPLEGRKPKKRPAYAKLAVRLEMGFEVSVVCVHDLNQNSNLNDEVKKNLEILHGVAGNLNGTLEGSESLDMNVNLSDGFEDILKKSGKSEKGFEGNESFCGYEDFRGGFDLNEWLNKIDGSELHVMDKVLDQAIIDRVSDEEVIHKVFNNVGLQHRIMESEYEYGNLQEVHADIKDELPKDSYSLRGDVIIEASLWASDLNLKAIRSEINRRSLAAEPEIVCDRSMKSKVFKKKIISANSSINSCLLEDSMDDIDTTDWNSDECGLCKMDGSLICCDGCPAAYHLKCVGIANDLLPEGDWFCPECAIDRHKPWLRTPKSLRGAEFLGMDLHGRTYFSICGYLLVFRTTDIKNDQST 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25180291 25184439 - Sed0017063.1 Sed12g1554 732510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1554 404 CDD PHD2_CHD_II 312 353 - -
Sed12g1554 404 ProSitePatterns Zinc finger PHD-type signature. 312 353 IPR019786 -
Sed12g1554 404 ProSiteProfiles Zinc finger PHD-type profile. 309 356 IPR019787 -
Sed12g1554 404 SMART PHD_3 311 354 IPR001965 -
Sed12g1554 404 SUPERFAMILY FYVE/PHD zinc finger 299 363 IPR011011 -
Sed12g1554 404 Pfam PHD-finger 312 353 IPR019787 -
Sed12g1554 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 373 IPR013083 -
Sed12g1554 404 PANTHER PHD FINGER FAMILY PROTEIN 248 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3147 Sed-Chr1:56186156 Sed12g1554 Sed-Chr12:25180291 4.00E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40221 PF00628 PHD 6.70E-10 CL0390 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1554 - - - 0.0