Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1580 ATGCAGTCAAAGTCTGAAACCAATAATCAGCACGGATCTGATCCAAATGGTGCTCCATCCACAAGTGTCTATTTTGAACCCTGGTGGCGTGGTATTGGATACAATCCTATTCCGTTACCTGCGGTAGGTGCAAATGCTTCCAGATCAACATCTCTTGAATTACCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATGTAAACGATGAAGAGGATGATGTTTACAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCTGGAAGTTACAGACTGGATGCTCAAAAGATGCAGCATGGGTCATCTACTTTGCCAGCTATGCACGGTGAATGTCTGGCGCAGGCTTCACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCGTCAAATCCATACCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCCTTGGGCTATCCTATGGTCGGAGCGCCACATGCTCGAATGCCATTGCCCTTCGAGATAGCACAAGACCCAGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAGGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCTTGAGAAGGATGAGGAGTACCGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGACGAACAGGACCTCTGGGTAG 765 46.67 MQSKSETNNQHGSDPNGAPSTSVYFEPWWRGIGYNPIPLPAVGANASRSTSLELPNGGSESNDGQSVSNNDVNDEEDDVYKEVQATGSPHSAGSYRLDAQKMQHGSSTLPAMHGECLAQASQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPFEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHALRRMRSTGGRFAKKNEADGKEMHSDKVNETNRTSG 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25803734 25808637 - Sed0015811.1 Sed12g1580 732536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1580 254 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 MobiDBLite consensus disorder prediction 208 227 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 208 254 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 228 247 - -
Sed12g1580 254 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed12g1580 254 Gene3D - 173 235 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 44 69 - -
Sed12g1580 254 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 39 74 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 1 22 - -
Sed12g1580 254 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 251 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1809 Sed-Chr3:12000700 Sed12g1580 Sed-Chr12:25803734 1.20E-25 dispersed
Sed05g1149 Sed-Chr5:12159514 Sed12g1580 Sed-Chr12:25803734 4.90E-67 dispersed
Sed05g1150 Sed-Chr5:12159514 Sed12g1580 Sed-Chr12:25803734 4.90E-67 dispersed
Sed09g1369 Sed-Chr9:37703014 Sed12g1580 Sed-Chr12:25803734 3.40E-38 dispersed
Sed10g0066 Sed-Chr10:395553 Sed12g1580 Sed-Chr12:25803734 1.50E-26 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed14g1617 Sed-Chr14:24365328 5.80E-25 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed08g1078 Sed-Chr8:19611324 1.40E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40222 PF02045 CBFB_NFYA 3.00E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1580 K08064 - csv:101212860 420.624