Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1580 ATGCAGTCAAAGTCTGAAACCAATAATCAGCACGGATCTGATCCAAATGGTGCTCCATCCACAAGTGTCTATTTTGAACCCTGGTGGCGTGGTATTGGATACAATCCTATTCCGTTACCTGCGGTAGGTGCAAATGCTTCCAGATCAACATCTCTTGAATTACCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATGTAAACGATGAAGAGGATGATGTTTACAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCTGGAAGTTACAGACTGGATGCTCAAAAGATGCAGCATGGGTCATCTACTTTGCCAGCTATGCACGGTGAATGTCTGGCGCAGGCTTCACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCGTCAAATCCATACCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCCTTGGGCTATCCTATGGTCGGAGCGCCACATGCTCGAATGCCATTGCCCTTCGAGATAGCACAAGACCCAGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAGGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCTTGAGAAGGATGAGGAGTACCGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGACGAACAGGACCTCTGGGTAG 765 46.67 MQSKSETNNQHGSDPNGAPSTSVYFEPWWRGIGYNPIPLPAVGANASRSTSLELPNGGSESNDGQSVSNNDVNDEEDDVYKEVQATGSPHSAGSYRLDAQKMQHGSSTLPAMHGECLAQASQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPFEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHALRRMRSTGGRFAKKNEADGKEMHSDKVNETNRTSG 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25803734 25808637 - Sed0015811.1 Sed12g1580 732536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1580 254 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 MobiDBLite consensus disorder prediction 208 227 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 208 254 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 228 247 - -
Sed12g1580 254 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed12g1580 254 Gene3D - 173 235 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 44 69 - -
Sed12g1580 254 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1580 254 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 39 74 - -
Sed12g1580 254 MobiDBLite consensus disorder prediction 1 22 - -
Sed12g1580 254 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 251 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1580 K08064 - - csv:101212860 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1809 Sed-Chr3:12000700 Sed12g1580 Sed-Chr12:25803734 1.20E-25 dispersed
Sed05g1149 Sed-Chr5:12159514 Sed12g1580 Sed-Chr12:25803734 4.90E-67 dispersed
Sed05g1150 Sed-Chr5:12159514 Sed12g1580 Sed-Chr12:25803734 4.90E-67 dispersed
Sed09g1369 Sed-Chr9:37703014 Sed12g1580 Sed-Chr12:25803734 3.40E-38 dispersed
Sed10g0066 Sed-Chr10:395553 Sed12g1580 Sed-Chr12:25803734 1.50E-26 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed14g1617 Sed-Chr14:24365328 5.80E-25 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed08g1078 Sed-Chr8:19611324 1.40E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g3289 . 1 231 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.0 2.4e-56 216.9
Sed01g3275 . 1 219 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 6.0e-52 202.2
Sed12g1580 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 3.2e-46 183.3
Sed01g3275 . 92 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 62.7 1.7e-39 161.0
Sed14g1617 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.2e-46 184.1
Sed10g0066 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
Sed10g0067 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40222 PF02045 CBFB_NFYA 3.00E-25 No_clan Sed TF