Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1593 ATGGAGAATCTTATGATGGTTGATGATACTTTGGGAGATTGTTGGGATATGGAAGTTGATGATATGAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGACGCAGAAGATCTAGAGAAGCGAATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGACAGAAGATTGCTGCACAGCAGGCTGCAGAGAAGCAGAAACCGAAGCAGGCATCCGACCAGGCTCAGAGGAAGAAGATGGCTAGAGCTCAAGATGGTATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAGCCTGTTAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAAGAAAAGGTTAAATTCGATAAGAATGGACCAGCTGCCATAGCCAAGTATGAAGCGGAATGTCTTGCCGAGGTAGAGGCAGATGGAAATGCAAATGGAGTTCTTCAGAACCTTCAGGATGCGACCCTCGGGTCTCTTTTGTCTTCTTTGATGCAGCATTGTGATCCTCCTCAGCGGAAGTACCCTTTAGAAAAAGGGGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAAGAGTGGTGGGAAAAACTTGGTCTATCCCATGGCAATAGTCCTCCTTATAAGAAACCACATGATCTGAAGAAGATGTGGAAAGTTGGGGTTTTAACAGCTGTGATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTACGGCAGTCGAAGTGCTTGCAAGACAAGATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGGGAGGAATCTCTAATTCGACAACCAAGCAGTGATAATGGGGCATCGGAAATAACAGAGACCCCGGTTGGTGGTCGTTGTGAAAACCAAGCTGCAGCAAGCAGTGACAGCGACTATGATGTTGATCTTGCAGATGATGGTGTCATGTCAGTTTCTTCCAAAGAGATCAGGAAAAATCAATCAATGGATGCGGAGCCATCCAGTAACCAACGCAATAATGCTCCACAACCTCCTCAAATAAAGGAGCAAGTTGAAAAGCATAGGAGAAAAAGACATTGTGGTGGCAGGACAAAACCTGCTGATCAAACACTGGCTACATCTCGGAACGAACAGGAACCAAACATCGAGCCAAGAAATACTCGACTAGACATAAACCATTCTGATGTACAATTAGACAGATTTGAAATTCCAGGAAAGCAACAACAAAATGATGCTGTTGCAGCTTTGAGACCACTGGAGAATGAATTGGTTGTGCGTTCCAACGTACCAGCTACCGAGTTCAACATGTTCTCCACAACACCCTCTGATGATATCGACATAAATTCCACTCAGAACATGTACGTTGATGGAAGGCCTCTGTTGTATCCTGTAATGCAGAATGCTGGGGTGCAACATGAAAGTGCTTACAATATTTATAATCCACCATTGGACTATAGACCCAATTATGAAGTGCCGCATTCTCAATTTGTTAATCAGCCTCAAATGAGGTTGGAGGAAGGAGCGCATGTGCCAACAGTACATAGAAACGATGATACTATAGGAGGACATTTCAACTATGTAAAAGAAACGTTCAACACCGAACAAGATAGGCCGGTTGATACACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGTGCATTGAATAGTCCATTCAATCTTGAAATCGATGGTGCAAGCTTGTTCGATGACTTTCTGCTTGATGACGATTTGATGCATTACTTCGGAGCTTAG 1800 43.39 MENLMMVDDTLGDCWDMEVDDMRCDNIAEKDVSDEEIDAEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKQASDQAQRKKMARAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAEVEADGNANGVLQNLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEEWWEKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASEITETPVGGRCENQAAASSDSDYDVDLADDGVMSVSSKEIRKNQSMDAEPSSNQRNNAPQPPQIKEQVEKHRRKRHCGGRTKPADQTLATSRNEQEPNIEPRNTRLDINHSDVQLDRFEIPGKQQQNDAVAALRPLENELVVRSNVPATEFNMFSTTPSDDIDINSTQNMYVDGRPLLYPVMQNAGVQHESAYNIYNPPLDYRPNYEVPHSQFVNQPQMRLEEGAHVPTVHRNDDTIGGHFNYVKETFNTEQDRPVDTQFGSPINSLSLDYGALNSPFNLEIDGASLFDDFLLDDDLMHYFGA 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26087537 26090344 - Sed0014223.1 Sed12g1593 732549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1593 599 Gene3D - 156 294 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1593 599 Gene3D - 74 150 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1593 599 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 562 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed12g1593 599 MobiDBLite consensus disorder prediction 63 83 - -
Sed12g1593 599 MobiDBLite consensus disorder prediction 333 359 - -
Sed12g1593 599 SUPERFAMILY DNA-binding domain of EIN3-like 165 286 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1593 599 Coils Coil 39 59 - -
Sed12g1593 599 FunFam Ethylene insensitive 3-like 1 74 152 - -
Sed12g1593 599 FunFam Ethylene insensitive 3-like 1 157 293 - -
Sed12g1593 599 Pfam Ethylene insensitive 3, DNA-binding domain 40 283 IPR047091 GO:0003700(InterPro)
Sed12g1593 599 MobiDBLite consensus disorder prediction 285 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1059 Sed-Chr8:14153924 Sed12g1593 Sed-Chr12:26087537 2.80E-238 dispersed
Sed11g1403 Sed-Chr11:29994556 Sed12g1593 Sed-Chr12:26087537 2.90E-94 dispersed
Sed12g1593 Sed-Chr12:26087537 Sed12g1623 Sed-Chr12:27273232 9.40E-90 dispersed
Sed12g1593 Sed-Chr12:26087537 Sed08g1058 Sed-Chr8:14153488 1.40E-239 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40227 PF04873 EIN3 2.30E-124 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1593 K14514 - csv:101210347 965.296