Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1604 ATGAGGCCTGTCAAACGCGAACCCGCCGCCAGCAGTCGGAGTAAAGGCGCCGCCGCCGTTGATGCTCAGAATTTGAGAGAGATTAAGCGGGAGAGGGTGGCTCGGGAGCGGGACAACAATTCCGGCGAGAACAACGCGCCTGGAGAAGAAGGGGAGAGTCTGCAAGATTTGACGAAGCGGCGGGTTCTTCGGTCTCGGTACCTTGCCGTCAGTCATGAGATTAGTGAAAGGAGAGATGATTTGACCAAGGATTTGGATAAGTTTAATGTTATCATCAATGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCTAGGGAACAAGTTGCAGATGCCGAAGTTTTGCAAGATCTTTCAAACTGCCTCATGTCCTCTATTAAGTCCCAGTTAAATGAAGGTGTTACTCCATCAGATTTTGTGAATTCTGTGCTCAGAGAATTTGCCAACATCACAGGTGGAATAAAATCTGAAGAAAACAATTTGATTTCTCTCAGTTGGAAAGATATTGGACTAAGCGTTTCGCCTATTTTCATGAATGGACATGGATGCCGCACCATGCTTGGACCTATGAATACTCAATTGAAGCAGCGAAAGACTAATATTTCCAGGAAACGTTCCAAGACTGCTGAAAGTTCCAGACCTGAAGAGGTTGATGAAAATGGATCCAAAGAAAAAACCGATACTGATAAGAACATGGGCATAATGTTTGGAATTTTGAGGAGGAATAAAACCATTAAACTTGAGCATTTGGTATTGAATAGAAAGTCTTTTGCACAGACAGTAGAAAACATATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGGGCTGAGATAACTATTGATAAAAATGGTTCTCATTTTGTATCACCGAAGAATGCTCCTGCCCATAAAGACATAATGTCTCATGAAGTTAATTACAGTCATTTTGTACTCAGATATGATTTCAAGGATTGGAAGCTGATGATGGATAAGGTACCAGTTGGAGAGGAGCAGATGCCTCACAGGAACTCTCTGAACTCAGCGCCGATGCCCCAAGAAGATGCATCGGAGGACGATTCTGAAGCAGCAGCATTGCCTACTACACCAATTCGTAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAGGATTCCCCTGATAATGGCTCTCATTCAGGACCAACTGCAATTTTGAGATGCAAGAGAAAGCTTAGTCAAGGTTTGGTAAATTAG 1221 43.33 MRPVKREPAASSRSKGAAAVDAQNLREIKRERVARERDNNSGENNAPGEEGESLQDLTKRRVLRSRYLAVSHEISERRDDLTKDLDKFNVIINEVEKLHEQVQKPREQVADAEVLQDLSNCLMSSIKSQLNEGVTPSDFVNSVLREFANITGGIKSEENNLISLSWKDIGLSVSPIFMNGHGCRTMLGPMNTQLKQRKTNISRKRSKTAESSRPEEVDENGSKEKTDTDKNMGIMFGILRRNKTIKLEHLVLNRKSFAQTVENIFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHKDIMSHEVNYSHFVLRYDFKDWKLMMDKVPVGEEQMPHRNSLNSAPMPQEDASEDDSEAAALPTTPIRKLSRNRGLVMQSVVEDSPDNGSHSGPTAILRCKRKLSQGLVN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26860659 26864111 + Sed0013592.1 Sed12g1604 732560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1604 406 PANTHER UNCHARACTERIZED 36 372 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed12g1604 406 MobiDBLite consensus disorder prediction 192 228 - -
Sed12g1604 406 Pfam Nse4 C-terminal 245 330 IPR014854 -
Sed12g1604 406 MobiDBLite consensus disorder prediction 329 394 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 24 43 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 203 228 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1604 K22825 - - csv:101220149 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1045 Sed-Chr8:12705012 Sed12g1604 Sed-Chr12:26860659 8.20E-103 dispersed
Sed12g1604 Sed-Chr12:26860659 Sed08g1044 Sed-Chr8:12705012 1.40E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1604 . 4 401 Non-SMC Element family AT1G51130 52.5 8.0e-101 365.2
Sed08g1044 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed08g1045 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed12g1604 . 55 381 Non-SMC Element family AT3G20760 51.5 1.5e-85 314.3
Sed08g1044 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
Sed08g1045 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35