Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1604 ATGAGGCCTGTCAAACGCGAACCCGCCGCCAGCAGTCGGAGTAAAGGCGCCGCCGCCGTTGATGCTCAGAATTTGAGAGAGATTAAGCGGGAGAGGGTGGCTCGGGAGCGGGACAACAATTCCGGCGAGAACAACGCGCCTGGAGAAGAAGGGGAGAGTCTGCAAGATTTGACGAAGCGGCGGGTTCTTCGGTCTCGGTACCTTGCCGTCAGTCATGAGATTAGTGAAAGGAGAGATGATTTGACCAAGGATTTGGATAAGTTTAATGTTATCATCAATGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCTAGGGAACAAGTTGCAGATGCCGAAGTTTTGCAAGATCTTTCAAACTGCCTCATGTCCTCTATTAAGTCCCAGTTAAATGAAGGTGTTACTCCATCAGATTTTGTGAATTCTGTGCTCAGAGAATTTGCCAACATCACAGGTGGAATAAAATCTGAAGAAAACAATTTGATTTCTCTCAGTTGGAAAGATATTGGACTAAGCGTTTCGCCTATTTTCATGAATGGACATGGATGCCGCACCATGCTTGGACCTATGAATACTCAATTGAAGCAGCGAAAGACTAATATTTCCAGGAAACGTTCCAAGACTGCTGAAAGTTCCAGACCTGAAGAGGTTGATGAAAATGGATCCAAAGAAAAAACCGATACTGATAAGAACATGGGCATAATGTTTGGAATTTTGAGGAGGAATAAAACCATTAAACTTGAGCATTTGGTATTGAATAGAAAGTCTTTTGCACAGACAGTAGAAAACATATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGGGCTGAGATAACTATTGATAAAAATGGTTCTCATTTTGTATCACCGAAGAATGCTCCTGCCCATAAAGACATAATGTCTCATGAAGTTAATTACAGTCATTTTGTACTCAGATATGATTTCAAGGATTGGAAGCTGATGATGGATAAGGTACCAGTTGGAGAGGAGCAGATGCCTCACAGGAACTCTCTGAACTCAGCGCCGATGCCCCAAGAAGATGCATCGGAGGACGATTCTGAAGCAGCAGCATTGCCTACTACACCAATTCGTAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAGGATTCCCCTGATAATGGCTCTCATTCAGGACCAACTGCAATTTTGAGATGCAAGAGAAAGCTTAGTCAAGGTTTGGTAAATTAG 1221 43.33 MRPVKREPAASSRSKGAAAVDAQNLREIKRERVARERDNNSGENNAPGEEGESLQDLTKRRVLRSRYLAVSHEISERRDDLTKDLDKFNVIINEVEKLHEQVQKPREQVADAEVLQDLSNCLMSSIKSQLNEGVTPSDFVNSVLREFANITGGIKSEENNLISLSWKDIGLSVSPIFMNGHGCRTMLGPMNTQLKQRKTNISRKRSKTAESSRPEEVDENGSKEKTDTDKNMGIMFGILRRNKTIKLEHLVLNRKSFAQTVENIFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHKDIMSHEVNYSHFVLRYDFKDWKLMMDKVPVGEEQMPHRNSLNSAPMPQEDASEDDSEAAALPTTPIRKLSRNRGLVMQSVVEDSPDNGSHSGPTAILRCKRKLSQGLVN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26860659 26864111 + Sed0013592.1 Sed12g1604 732560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1604 406 PANTHER UNCHARACTERIZED 36 372 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed12g1604 406 MobiDBLite consensus disorder prediction 192 228 - -
Sed12g1604 406 Pfam Nse4 C-terminal 245 330 IPR014854 -
Sed12g1604 406 MobiDBLite consensus disorder prediction 329 394 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 24 43 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 203 228 - -
Sed12g1604 406 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1045 Sed-Chr8:12705012 Sed12g1604 Sed-Chr12:26860659 8.20E-103 dispersed
Sed12g1604 Sed-Chr12:26860659 Sed08g1044 Sed-Chr8:12705012 1.40E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1604 K22825 - csv:101220149 606.29