Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1621 ATGGCGGCGAATCGATTCCGTACTCCCACTTTCTTGTTTCTCTTTTACGTAGCCCTAACTTCGGTTCTTGACCTTGCTTTCGCCAACTCCGAAGGCGATGCTCTCTATACTCTCCGCCGGAGCTTGAGCGATCCCGATAACGTTCTTCAGAGCTGGGATCCTACCCTCGTCAACCCCTGTACTTGGTTCCACATCACTTGTAACCAGGACAACCGCGTTACCCGGCTGGATTTGGGGAATTCTAACTTGTCTGGACATCTAGTTCCTGAACTTGGAAGGCTCCAGCACCTGCAATATCTGGAGCTTTACAAAAACAACATCCATGGAACTATTCCAGATGAGCTTGGAAACTTGAAGAGCCTCATCAGTCTCGACTTGTATAACAACAACTTTACTGGAAGAATTCCAGCTTCATTGGGGAAATTGAAATCTCTTGTGTTCTTACGGCTTAATGACAACCGATTAAATGGGCCAATCCCAAGAGATCTTACTGGAATTACAAGCCTTAAAGTTGTGGATATCTCAAATAATGACTTGTGTGGAACAATACCAACCAGTGGACCATTTGAGCACATACCTTTAAACAAGTTTGGAAGCGAAATTAGAGTTGTCTGGAACATTAATCCCACAGCCGCCTCCACCCTGGGTACTCAAGAGGAGCACACCCTTACCCCTAGGGGACATCTCTTTTTGACTTTTGAGCTTCTCAAGTGA 714 45.8 MAANRFRTPTFLFLFYVALTSVLDLAFANSEGDALYTLRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGHLVPELGRLQHLQYLELYKNNIHGTIPDELGNLKSLISLDLYNNNFTGRIPASLGKLKSLVFLRLNDNRLNGPIPRDLTGITSLKVVDISNNDLCGTIPTSGPFEHIPLNKFGSEIRVVWNINPTAASTLGTQEEHTLTPRGHLFLTFELLK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27216621 27222152 - Sed0003842.2 Sed12g1621 732577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1621 237 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 196 - -
Sed12g1621 237 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Sed12g1621 237 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sed12g1621 237 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Sed12g1621 237 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515(InterPro)
Sed12g1621 237 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Sed12g1621 237 SUPERFAMILY L domain-like 29 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1621 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1621 Sed-Chr12:27216621 Sed10g1721 Sed-Chr10:34204923 8.70E-31 dispersed
Sed12g1620 Sed-Chr12:27216621 Sed12g1621 Sed-Chr12:27216621 3.60E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1324 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00166 Cam06g0047 Cec06g0186 Cco06g0179 Clacu06g0181 Cmu06g0176 Cre06g0949 . . . . . . . Cme11g02356 . . . . . . . . Sed12g1621 . . . . . . . . Bhi12g02401 Tan06g1456 Cmetu11g1073 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109