Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1623 ATGATGATGATGTTCAACGAGATAGGATTTTGTGATGATATGGATTTTTTTTCTGCTCCAATTGTGGAGGGAGATGTCGTACCTCCACCAGCCAATCCCGAAGTTGTTGTGGAAGATGATTATTCCGATGAAGAGATGGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGCAAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCGAGAGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGGAAACCAGTTACTGGAGCATCGGATAATCTTCGAGAATGGTGGAAGGATAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAAGCAGACAACGCGATTCCTGGACAAAACGATGGGTGTAATTCGATCGGTCCAACCCCACACACCTTGCAGGAACTTCAGGATACCACCCTTGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTTCTCCGCCATGGTGGCCTACTGGAGTTGAGGAATGGTGGCCTCAACTTGGGTTGCCAAAGGAACAAGGCCCTCCGCCTTACAAGAAGCCTCATGACTTGAAGAAGGCGTGGAAAGTTGGTGTTTTGACCGCGGTCATCAAGCATATGTTCCCTGATATAGCCAAGATCCGCAAGCTGGTTAGGCAGTCCAAGTGTCTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGTGAGCTTTATCCCAACTCTTGCCCGCCTTTGACTTCCGGTGGTGGAAGTGGATCGCTGGTCATTAACGATTGCAGCGAGTATGATGTAGATGGTGTTGATGAGGAACAGAATTTTGATGTCCAAGATCGCAAACCTGATAACCATAACTCATTCAACTTGGGGATGGAGAGAATGAGAGAACGAGTGACTCTTCGACAACCACCTTATGCAACCAAAGGAGAGGTTCCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAGCATGATGATGGATCAGAGAATATTTACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTACGTCTCGGGTTTAATGACCGGACGTCTAGAGACAACCATCAGTTGACCTGCCCTTACAGAACTTCTTCAGAGTTCAGTAGTTCAAATTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAATCGTTTGCCCAACCCAAGCCAGCTCCTCCACCCTCGGTCAGCTCGGTTCCATCGTCCTTCGACTTGTCCAGTTTGGGAGTTCCAGAAGATGGTCAAAAGCTCATCAGTGAGCTCATGTCAATCTATGACACCAACATCCAAGGCATCAAGAACAACATAAACACTGTTAACGGTGCAGTCACAGAGAACCAAAATCCTACTCAGTTGAAGATTCAACCTCAACAAGATGAATACTTCAGGAATCAAGGTATAATGATTGATGGCAACTTCTTCGAAGGATCAAATGTTTCGAGCCGCCATCAAATTTTCTCAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCTCCTTTCGAAAACCACCACCATCACAGCAACAATAACAACAACAACAGCAACTTCAACTTGGTGTTTGAATCTCCATTTGATTTGTCCACTTTCGACTACAAAGAAGAAGTTCCTGTAGCAGCAGCCATGGATACACTGTCAAAACAGCAGGATATTTCCTTATGGTATCAGTAA 1890 45.45 MMMMFNEIGFCDDMDFFSAPIVEGDVVPPPANPEVVVEDDYSDEEMDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGQNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLTSGGGSGSLVINDCSEYDVDGVDEEQNFDVQDRKPDNHNSFNLGMERMRERVTLRQPPYATKGEVPTNLDFMRKRKPTSDLSMMMDQRIFTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSSSNFHVNEVKPVIFPQSFAQPKPAPPPSVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNIQGIKNNINTVNGAVTENQNPTQLKIQPQQDEYFRNQGIMIDGNFFEGSNVSSRHQIFSRDEGQFDRFKPMNSPFENHHHHSNNNNNNSNFNLVFESPFDLSTFDYKEEVPVAAAMDTLSKQQDISLWYQ 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27273232 27276692 + Sed0007953.1 Sed12g1623 732579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1623 629 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Sed12g1623 629 Coils Coil 48 68 - -
Sed12g1623 629 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1623 629 FunFam Ethylene insensitive 3-like 1 81 159 - -
Sed12g1623 629 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 618 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed12g1623 629 FunFam Ethylene insensitive 3-like 1 169 306 - -
Sed12g1623 629 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1623 629 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0538 Sed-Chr3:3311908 Sed12g1623 Sed-Chr12:27273232 1.20E-188 dispersed
Sed12g1593 Sed-Chr12:26087537 Sed12g1623 Sed-Chr12:27273232 9.40E-90 dispersed
Sed12g1623 Sed-Chr12:27273232 Sed13g0935 Sed-Chr13:7066148 2.30E-83 dispersed
Sed12g1623 Sed-Chr12:27273232 Sed11g1403 Sed-Chr11:29994556 9.90E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40230 PF04873 EIN3 1.50E-128 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1623 K14514 - csv:101206055 1087.4