Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1623 ATGATGATGATGTTCAACGAGATAGGATTTTGTGATGATATGGATTTTTTTTCTGCTCCAATTGTGGAGGGAGATGTCGTACCTCCACCAGCCAATCCCGAAGTTGTTGTGGAAGATGATTATTCCGATGAAGAGATGGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGCAAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCGAGAGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGGAAACCAGTTACTGGAGCATCGGATAATCTTCGAGAATGGTGGAAGGATAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAAGCAGACAACGCGATTCCTGGACAAAACGATGGGTGTAATTCGATCGGTCCAACCCCACACACCTTGCAGGAACTTCAGGATACCACCCTTGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTTCTCCGCCATGGTGGCCTACTGGAGTTGAGGAATGGTGGCCTCAACTTGGGTTGCCAAAGGAACAAGGCCCTCCGCCTTACAAGAAGCCTCATGACTTGAAGAAGGCGTGGAAAGTTGGTGTTTTGACCGCGGTCATCAAGCATATGTTCCCTGATATAGCCAAGATCCGCAAGCTGGTTAGGCAGTCCAAGTGTCTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGTGAGCTTTATCCCAACTCTTGCCCGCCTTTGACTTCCGGTGGTGGAAGTGGATCGCTGGTCATTAACGATTGCAGCGAGTATGATGTAGATGGTGTTGATGAGGAACAGAATTTTGATGTCCAAGATCGCAAACCTGATAACCATAACTCATTCAACTTGGGGATGGAGAGAATGAGAGAACGAGTGACTCTTCGACAACCACCTTATGCAACCAAAGGAGAGGTTCCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAGCATGATGATGGATCAGAGAATATTTACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTACGTCTCGGGTTTAATGACCGGACGTCTAGAGACAACCATCAGTTGACCTGCCCTTACAGAACTTCTTCAGAGTTCAGTAGTTCAAATTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAATCGTTTGCCCAACCCAAGCCAGCTCCTCCACCCTCGGTCAGCTCGGTTCCATCGTCCTTCGACTTGTCCAGTTTGGGAGTTCCAGAAGATGGTCAAAAGCTCATCAGTGAGCTCATGTCAATCTATGACACCAACATCCAAGGCATCAAGAACAACATAAACACTGTTAACGGTGCAGTCACAGAGAACCAAAATCCTACTCAGTTGAAGATTCAACCTCAACAAGATGAATACTTCAGGAATCAAGGTATAATGATTGATGGCAACTTCTTCGAAGGATCAAATGTTTCGAGCCGCCATCAAATTTTCTCAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCTCCTTTCGAAAACCACCACCATCACAGCAACAATAACAACAACAACAGCAACTTCAACTTGGTGTTTGAATCTCCATTTGATTTGTCCACTTTCGACTACAAAGAAGAAGTTCCTGTAGCAGCAGCCATGGATACACTGTCAAAACAGCAGGATATTTCCTTATGGTATCAGTAA 1890 45.45 MMMMFNEIGFCDDMDFFSAPIVEGDVVPPPANPEVVVEDDYSDEEMDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGQNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLTSGGGSGSLVINDCSEYDVDGVDEEQNFDVQDRKPDNHNSFNLGMERMRERVTLRQPPYATKGEVPTNLDFMRKRKPTSDLSMMMDQRIFTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSSSNFHVNEVKPVIFPQSFAQPKPAPPPSVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNIQGIKNNINTVNGAVTENQNPTQLKIQPQQDEYFRNQGIMIDGNFFEGSNVSSRHQIFSRDEGQFDRFKPMNSPFENHHHHSNNNNNNSNFNLVFESPFDLSTFDYKEEVPVAAAMDTLSKQQDISLWYQ 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27273232 27276692 + Sed0007953.1 Sed12g1623 732579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1623 629 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Sed12g1623 629 Coils Coil 48 68 - -
Sed12g1623 629 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1623 629 FunFam Ethylene insensitive 3-like 1 81 159 - -
Sed12g1623 629 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 618 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed12g1623 629 FunFam Ethylene insensitive 3-like 1 169 306 - -
Sed12g1623 629 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed12g1623 629 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1623 K14514 - - csv:101206055 1087.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0538 Sed-Chr3:3311908 Sed12g1623 Sed-Chr12:27273232 1.20E-188 dispersed
Sed12g1593 Sed-Chr12:26087537 Sed12g1623 Sed-Chr12:27273232 9.40E-90 dispersed
Sed12g1623 Sed-Chr12:27273232 Sed13g0935 Sed-Chr13:7066148 2.30E-83 dispersed
Sed12g1623 Sed-Chr12:27273232 Sed11g1403 Sed-Chr11:29994556 9.90E-199 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1623 . 2 628 EIL Transcription Factor Family AT2G27050 59.7 3.1e-194 676.0
Sed11g1403 . 1 506 EIL Transcription Factor Family AT2G27050 62.3 1.1e-167 587.8
Sed03g0538 . 8 560 EIL Transcription Factor Family AT2G27050 56.6 1.1e-162 571.2
Sed08g1058 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed08g1059 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed12g1593 . 66 322 EIL Transcription Factor Family AT2G27050 63.6 9.2e-90 328.9
Sed07g1748 . 8 295 EIL Transcription Factor Family AT2G27050 52.5 5.9e-81 299.7
Sed08g1058 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed08g1059 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed12g1593 . 58 575 EIL Transcription Factor Family AT1G73730 54.6 2.3e-135 480.3
Sed03g0538 . 35 335 EIL Transcription Factor Family AT1G73730 60.3 3.1e-103 373.6
Sed12g1623 . 36 334 EIL Transcription Factor Family AT1G73730 61.6 3.1e-103 373.6
Sed11g1403 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.2e-102 371.7
Sed07g1748 . 15 262 EIL Transcription Factor Family AT1G73730 53.9 3.7e-72 270.4
Sed13g0935 . 21 269 EIL Transcription Factor Family AT1G73730 52.0 4.8e-72 270.0
Sed12g1623 . 3 628 EIL Transcription Factor Family AT3G20770 61.5 3.0e-211 732.6
Sed11g1403 . 7 504 EIL Transcription Factor Family AT3G20770 63.2 3.7e-169 592.8
Sed03g0538 . 7 501 EIL Transcription Factor Family AT3G20770 61.9 2.5e-165 580.1
Sed08g1058 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed08g1059 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed12g1593 . 66 288 EIL Transcription Factor Family AT3G20770 69.9 4.4e-90 330.1
Sed07g1748 . 8 261 EIL Transcription Factor Family AT3G20770 57.0 6.0e-79 293.1
Sed07g1748 . 7 274 EIL Transcription Factor Family AT5G65100 57.5 9.7e-89 325.5
Sed08g1058 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed08g1059 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed12g1593 . 83 284 EIL Transcription Factor Family AT5G65100 60.2 3.5e-70 263.8
Sed13g0935 . 21 359 EIL Transcription Factor Family AT5G10120 54.9 1.9e-98 357.5
Sed07g1748 . 12 324 EIL Transcription Factor Family AT5G10120 56.0 8.4e-94 342.0
Sed08g1058 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed08g1059 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed12g1593 . 77 286 EIL Transcription Factor Family AT5G10120 58.0 4.5e-71 266.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40230 PF04873 EIN3 1.50E-128 No_clan Sed TF