Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1638 ATGGGTGATCTCGAAACTCGGCGAATTAGAAACATATGTATACTAGCACACGTTGACCATGGAAAAACGACGCTTGCTGACCATCTCATTGCTGCCTCGGGGGGCGGCTTGGTCCACCCAAAGATGGCAGGCCGCCTTCGTTTCATGGATTATCTTGATGAGGAACAGAGGCGGGCAATTACTATGAAGAGCTCTTCGATTGGTCTGCGGTACAAGGAATACTTTGTTAACCTCATTGATTCCCCTGGCCATATGGACTTTTGTAGTGAAGTGTCCACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCCGTGGAGGGTGTGCACATTCAAACCCATGCCGTTTTGCGACAGGCTTGGATCGAGAAACTTACGCCGTGTTTGGTTCTCAATAAGATTGATAGATTGATATGCGAGTTGAAATTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTCAATGGGATAATGAGTGCGTACAAGTCCGAGAAATATTTGTCTGATGTAGATTCATTGCTCGCCGGTTCTTCAGATGAGGTCAACGATGAGAGCCTCGAGTTTATTGAGGATGATGAGGAAGATACGTTCCAACCCCAGAAAGGGAATGTGGTGTTTGTGTGTGCGTTAGATGGGTGGGGATTTGGCATTAATGAGTTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCAAATGTATCTGCGTTGAAGAAGGCCTTGTGGGGTCCTCGATATTTTAATCCAAAGACCAAGATGATTGTTGGAAAGAAAGCCATGGCGGGAGGAAGTAAAGCTCGTCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGAGCTGCTTTAGAAACGGATGGGAATAGGGAGGTGCTTCAAAAGGTTAATAGCTCATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTCAAGGTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTATCAATGGTCGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGATGGATTTTATTGATACCGTAGTGAATGCTGATGTGCTAACTGAGGCAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCAAGTCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCACTGCCAGTTAAAATGCTTCCACGGAGGGACAATCATGGTGAAACTAGTATTTCATATGATGATGGTGGAGATGGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGATATTTAGTGGAGTTCTTTATTCTGGACAGAGAGTTTTCGTGCTTTCGGCTTTATATGACCCAACAAAAGGAGAATCAATGCAAAAGCACATTCAGGAGGCCGAGCTGCATTCATTTTATGTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGTCTTAGCCATCACATACTGAAAAGTGCAACTCTTTCATCCACAAAAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCGCCAACTCTTAGGGTTGCACTTGAGCCATCCGATCCTGGAGATATAGGTGCCTTATTGAAAGGTTTAAGGCTTTTAAATCGAGCTGACCCTTTTGTGGAGGTAACTGTTTCATCAAGAGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTTGAAAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGATAAGCTTGGAGGTCTCTCCACCTCTTGTGTCATATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTCAGATTATTTTAAAATGTTATCTGAAAGCACAGATTGTGTTATTAAGAAAACCCCAAATGGTAGATGTGCTGTCAAAGTGCAGGTACTGAAACTTCCACTTGCTCTAGCTAAAGTACTTGATGAAAATTCTGATGTTCTGGGAGACATTATTGGAGTCAAGTTGGGGCAAAGCTATAAAAACTTTGAAACAAAGAGATCAAGCTTGAGGGAAAATGAGAATCCAGCAGAAACATTAAAAAAACTCATAGCAGATGCAGTCTGTAGCAGTATATCCTCGAAGGATGACAAACATAACACACAGTGGTCAAAGCTTCTTAGGCGAATTCGGGCACTTGGACCACAGCATATTGGTCCTAACATTCTGATCAATCCAGATCCTGAATTAAAGGATTCTGGTTGCTCTGTTCTTATTCGGGGTCCGCCTCATGCATCACAGAGATTGGGTTTTGTGGATGATTCTTCGTATGGTGACTTGGATGCTGAAACATCTTTAGAAGGTGATATTTCTTCTGTAGCATCCCCTGAAGGAACTCAGACACTACACATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCAGGGTTTCAGCTTGCGACATCAGCTGGGCCCTTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGAGGCCTCTATTTCTTCATTGCCTGTGAATTCAGAGGAAACTGAAACTCCCTTTCAACAAGATAACAATGCTATCTTTTCTGGACAAGTTATGGCAGCTGTGAAGGATGCCTGTAGAGCAGCTGTACTTCAGAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAACACTCCAACTGAGTATTTGGGTCCAATGTATGCTGTGCTTTCTCGAAGGCGAGCCCGAGTTTTGAAAGAAGAAATGAAGGAAGGTTCACCTTTGTTTACTGTGCATGCATATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCGGATGAGTTAAGGAGGTGGACCTCTGGAGCTGCAAGTGCTCTTCTTGTGCTTAGCCATTGGGAAGAACTCTGTGAAGATCCATTTTTCGTCCCGAAAACTGAGGAAGAAATTGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCACAACACAGCAAGAAAGCTCATTGATACGGTAAGACGGCGTAAAGGTCTTCCCGTGGAAGAAAAAGTTGTGCAGCATGCAACAAAGCAAAGAACTCTGGCTCGTAAAGTATAG 3090 43.2 MGDLETRRIRNICILAHVDHGKTTLADHLIAASGGGLVHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYFVNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSLLAGSSDEVNDESLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNREVLQKVNSSFNLNIPARELSNKDPKVVLQGIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKMDFIDTVVNADVLTEADLVKKSIEACDSSPEAPFVAFVSKMFALPVKMLPRRDNHGETSISYDDGGDGESDECFLAFARIFSGVLYSGQRVFVLSALYDPTKGESMQKHIQEAELHSFYVMMGQGLKPVTSVKAGNLVAIRGLSHHILKSATLSSTKNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCIKDLKDRFARISLEVSPPLVSYKETIEGEASSVSDYFKMLSESTDCVIKKTPNGRCAVKVQVLKLPLALAKVLDENSDVLGDIIGVKLGQSYKNFETKRSSLRENENPAETLKKLIADAVCSSISSKDDKHNTQWSKLLRRIRALGPQHIGPNILINPDPELKDSGCSVLIRGPPHASQRLGFVDDSSYGDLDAETSLEGDISSVASPEGTQTLHMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVEASISSLPVNSEETETPFQQDNNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMKEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLHNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27519340 27523230 - Sed0018542.1 Sed12g1638 732594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1638 1029 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Sed12g1638 1029 Gene3D Elongation Factor G (Translational Gtpase), domain 3 533 610 - -
Sed12g1638 1029 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1026 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Sed12g1638 1029 FunFam Elongation factor like GTPase 1 886 1021 - -
Sed12g1638 1029 CDD EF2 10 232 - -
Sed12g1638 1029 SUPERFAMILY Ribosomal protein S5 domain 2-like 609 889 IPR020568 -
Sed12g1638 1029 FunFam Elongation factor 2-like protein 2 212 - -
Sed12g1638 1029 Gene3D Translation factors 350 532 - -
Sed12g1638 1029 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 SUPERFAMILY EF-G C-terminal domain-like 890 990 IPR035647 -
Sed12g1638 1029 Gene3D - 630 884 IPR014721 -
Sed12g1638 1029 CDD EF2_snRNP_III 535 606 - -
Sed12g1638 1029 FunFam Translation elongation factor 2 534 610 - -
Sed12g1638 1029 SUPERFAMILY Translation proteins 388 529 IPR009000 -
Sed12g1638 1029 CDD aeEF2_snRNP_like_IV 606 894 - -
Sed12g1638 1029 Gene3D - 3 213 IPR027417 -
Sed12g1638 1029 SMART EFG_C_a 887 976 IPR000640 -
Sed12g1638 1029 Pfam Elongation factor Tu GTP binding domain 8 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed12g1638 1029 CDD eEF2_snRNP_like_C 890 968 - -
Sed12g1638 1029 Gene3D - 886 1021 - -
Sed12g1638 1029 Pfam Elongation factor G C-terminus 887 971 IPR000640 -
Sed12g1638 1029 SUPERFAMILY EF-G C-terminal domain-like 533 607 IPR035647 -
Sed12g1638 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Sed12g1638 1029 CDD EF2_II 397 520 - -
Sed12g1638 1029 FunFam Elongation factor like GTPase 1 224 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1552 Sed-Chr8:30614946 Sed12g1638 Sed-Chr12:27519340 1.40E-87 dispersed
Sed08g1553 Sed-Chr8:30615095 Sed12g1638 Sed-Chr12:27519340 1.40E-87 dispersed
Sed12g1190 Sed-Chr12:8051189 Sed12g1638 Sed-Chr12:27519340 8.00E-21 dispersed
Sed12g1638 Sed-Chr12:27519340 Sed05g3258 Sed-Chr5:42063261 8.20E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1638 K14536 - csv:101220903 1833.92