Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1683 ATGGGGAGAGAATTGCAGAAGCAGCCACACCAAGAAATGGCGTCGGCGGTGGAGCAGCTGCTCGCCGTTAACCCTTACAATCCCGACATCCTCCCTGATCTCGAAAACTACGTAAATGAGCAGGTCTCGTCGGAAACCTACAGCTTAGATGCTAATTTATGCCTTCTTCGCCTCTACCAGTTTGAGCCTGAGAGAATGAGTATTCAAATTGTGGCTCGCATCCTTGTCAAGGCTCTGATGGCAATGCCAGCTCCTGATTTCAGCCTTTGTCTCTTTTTAATACCAGAGCGAGTGCAAATGGAGGATCAGTTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTCCGCCAATTCTGGGATGAAGCTTCTAAGAACCGCCACATAGTTGAAGCTGTACCAGGTTTTGAGCAAGCAATTCAAGCTTATGCTGTCCATGTTCTCTCCTTAACTTATCAAAAGGTTCCTAGATCCGTGCTTGCAGAGGCAATCAATATTGAGGGCCTATCTTTGGACAAATTTCTGGAACACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCAAGGGAAGGGCCAACTTATTGTTATACCACCCAGCGAATTCAACAATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATTACTCGCATCTTTCCGATTCTCGGCTAG 699 45.92 MGRELQKQPHQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSIQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGQGKGQLIVIPPSEFNNPELKKKSSDSIPLEHITRIFPILG 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28060455 28064380 + Sed0006808.1 Sed12g1683 732639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1683 232 Gene3D - 128 230 IPR036388 -
Sed12g1683 232 FunFam Eukaryotic translation initiation factor 3 subunit K 9 125 - -
Sed12g1683 232 SUPERFAMILY Winged helix DNA-binding domain 137 229 IPR036390 -
Sed12g1683 232 SUPERFAMILY ARM repeat 12 135 IPR016024 -
Sed12g1683 232 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 11 229 IPR009374 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)
Sed12g1683 232 FunFam Eukaryotic translation initiation factor 3 subunit K 128 231 - -
Sed12g1683 232 Gene3D ARM repeat; domain 1 9 125 IPR016020 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006446(InterPro)|GO:0043022(InterPro)
Sed12g1683 232 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 232 IPR009374 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed12g1683 232 Pfam CSN8/PSMD8/EIF3K family 68 193 IPR033464 -
Sed12g1683 232 ProSiteProfiles PCI domain profile. 47 206 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0951 Sed-Chr8:8576144 Sed12g1683 Sed-Chr12:28060455 3.60E-122 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1683 K15028 - csv:101214255 442.195