Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1695 | ATGGCCCTGTCCATTTCTCCGACTGTGCTCTCAACCCTCGGGATCGGAGAATCATCATCATCATCATCATCATTATCATCATCATTATCATCGTGGAGAGTCCGTTTTTCGGTGAAATCAATCCCGGAACACAAGCTCCGGGGAGATTGTTTTCATCGGAAGGCGGCGAAATCGGGCGTGTCCAGTGTGTGTGAACCGCTCCCGCCCGACCGGCCCCTGTGGTTCCCGGGCAGCAGCCCGCCCGAGTGGCTGGATGGAAGCCTTCCAGGGGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGCTGCTAACATGGTTCGCACAAGCAGAGCTAATACACGGGAGATGGGCGATGCTAGCCGTGGCTGGAATCCTGCTACCCGAATGGTTCGAAACCTTAGGACTCATCGACAACTTCTCATGGTTCGACGCGGGGTCGCGGGAGTATTTTGCGGACCCGACAACGCTGCTGGTGGCGCAGATGGCTCTCATGGGGTGGGTGGAGGGTCGACGCTGGGCCGACTTGGTGAACCCGGGCAGCGTGGACGTGGACTTCAAACTGCCCCACAAGAAGAAGCCGAAGCCGGACGTGGGGTACCCGGGCGGGTTCTGGTTCGACCCCTTGATGTGGGGCAGGGGGTCGCCCGAGCCGGTTATGGTGCTGCGGACCAAGGAGATCAAGAATGGGCGCTTGGCTATGCTGGCGTTTGTTGGACTGTGCTTTCAGGCTATTTATACAGGCCAAGGTCCGCTTGAGAACCTGGCTGCCCACGTTGCAGATCCTGGCCACTGCAACATATTTTCGGCGTTTAGCTCGAGTTGA | 831 | 57.88 | MALSISPTVLSTLGIGESSSSSSSLSSSLSSWRVRFSVKSIPEHKLRGDCFHRKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLTWFAQAELIHGRWAMLAVAGILLPEWFETLGLIDNFSWFDAGSREYFADPTTLLVAQMALMGWVEGRRWADLVNPGSVDVDFKLPHKKKPKPDVGYPGGFWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSS | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 28189246 | 28193128 | + | Sed0004098.1 | Sed12g1695 | 732651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1695 | 276 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 25 | 270 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro) | |
Sed12g1695 | 276 | Pfam | Chlorophyll A-B binding protein | 80 | 246 | IPR022796 | - | |
Sed12g1695 | 276 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 81 | 266 | - | - | |
Sed12g1695 | 276 | SUPERFAMILY | Chlorophyll a-b binding protein | 70 | 273 | - | - | |
Sed12g1695 | 276 | Gene3D | Chlorophyll a/b binding protein domain | 81 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2838 | Sed-Chr1:23826376 | Sed12g1695 | Sed-Chr12:28189246 | 8.50E-37 | dispersed | |
Sed06g0152 | Sed-Chr6:1067515 | Sed12g1695 | Sed-Chr12:28189246 | 1.90E-82 | dispersed | |
Sed08g0226 | Sed-Chr8:1288558 | Sed12g1695 | Sed-Chr12:28189246 | 9.30E-55 | dispersed | |
Sed08g2078 | Sed-Chr8:34963279 | Sed12g1695 | Sed-Chr12:28189246 | 2.70E-54 | dispersed | |
Sed10g1832 | Sed-Chr10:35350636 | Sed12g1695 | Sed-Chr12:28189246 | 1.70E-35 | dispersed | |
Sed10g1833 | Sed-Chr10:35353813 | Sed12g1695 | Sed-Chr12:28189246 | 1.10E-34 | dispersed | |
Sed12g1695 | Sed-Chr12:28189246 | Sed12g1956 | Sed-Chr12:30606377 | 5.90E-55 | dispersed | |
Sed12g1695 | Sed-Chr12:28189246 | Sed06g1754 | Sed-Chr6:42277273 | 1.00E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1695 | K08908 | - | csv:101211430 | 460.299 |