Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1695 ATGGCCCTGTCCATTTCTCCGACTGTGCTCTCAACCCTCGGGATCGGAGAATCATCATCATCATCATCATCATTATCATCATCATTATCATCGTGGAGAGTCCGTTTTTCGGTGAAATCAATCCCGGAACACAAGCTCCGGGGAGATTGTTTTCATCGGAAGGCGGCGAAATCGGGCGTGTCCAGTGTGTGTGAACCGCTCCCGCCCGACCGGCCCCTGTGGTTCCCGGGCAGCAGCCCGCCCGAGTGGCTGGATGGAAGCCTTCCAGGGGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGCTGCTAACATGGTTCGCACAAGCAGAGCTAATACACGGGAGATGGGCGATGCTAGCCGTGGCTGGAATCCTGCTACCCGAATGGTTCGAAACCTTAGGACTCATCGACAACTTCTCATGGTTCGACGCGGGGTCGCGGGAGTATTTTGCGGACCCGACAACGCTGCTGGTGGCGCAGATGGCTCTCATGGGGTGGGTGGAGGGTCGACGCTGGGCCGACTTGGTGAACCCGGGCAGCGTGGACGTGGACTTCAAACTGCCCCACAAGAAGAAGCCGAAGCCGGACGTGGGGTACCCGGGCGGGTTCTGGTTCGACCCCTTGATGTGGGGCAGGGGGTCGCCCGAGCCGGTTATGGTGCTGCGGACCAAGGAGATCAAGAATGGGCGCTTGGCTATGCTGGCGTTTGTTGGACTGTGCTTTCAGGCTATTTATACAGGCCAAGGTCCGCTTGAGAACCTGGCTGCCCACGTTGCAGATCCTGGCCACTGCAACATATTTTCGGCGTTTAGCTCGAGTTGA 831 57.88 MALSISPTVLSTLGIGESSSSSSSLSSSLSSWRVRFSVKSIPEHKLRGDCFHRKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLTWFAQAELIHGRWAMLAVAGILLPEWFETLGLIDNFSWFDAGSREYFADPTTLLVAQMALMGWVEGRRWADLVNPGSVDVDFKLPHKKKPKPDVGYPGGFWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28189246 28193128 + Sed0004098.1 Sed12g1695 732651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1695 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 25 270 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed12g1695 276 Pfam Chlorophyll A-B binding protein 80 246 IPR022796 -
Sed12g1695 276 FunFam Chlorophyll a-b binding protein, chloroplastic 81 266 - -
Sed12g1695 276 SUPERFAMILY Chlorophyll a-b binding protein 70 273 - -
Sed12g1695 276 Gene3D Chlorophyll a/b binding protein domain 81 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2838 Sed-Chr1:23826376 Sed12g1695 Sed-Chr12:28189246 8.50E-37 dispersed
Sed06g0152 Sed-Chr6:1067515 Sed12g1695 Sed-Chr12:28189246 1.90E-82 dispersed
Sed08g0226 Sed-Chr8:1288558 Sed12g1695 Sed-Chr12:28189246 9.30E-55 dispersed
Sed08g2078 Sed-Chr8:34963279 Sed12g1695 Sed-Chr12:28189246 2.70E-54 dispersed
Sed10g1832 Sed-Chr10:35350636 Sed12g1695 Sed-Chr12:28189246 1.70E-35 dispersed
Sed10g1833 Sed-Chr10:35353813 Sed12g1695 Sed-Chr12:28189246 1.10E-34 dispersed
Sed12g1695 Sed-Chr12:28189246 Sed12g1956 Sed-Chr12:30606377 5.90E-55 dispersed
Sed12g1695 Sed-Chr12:28189246 Sed06g1754 Sed-Chr6:42277273 1.00E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1695 K08908 - csv:101211430 460.299