Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1716 ATGTTTCCTTTCACCTCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATAGTTTCTGGAATTCCTATACCTCATGATCTCCTCTTCAGTATTAAAACAAGTACCTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCCTTACAACCTCAACATGTTGGGTGGAACTATTTGCAGATGAGTTTAGGAAGAAAGATAGACCCAGAACCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAGGCATATCCAGATTCCAAATACTGTGAGAGGCACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTCAAAACAAAACCAACAAATGATATCAACCGCCGCCTATCAAATCCAGTATTTTCTTCAACTCCTAATGGAAATGGCATATCAACCAAAGACACTAATACCCTCTTGCTTCTAGAACCTGGTTCATACTCAAACAGAAACACAGATTACAGGTATGGGCCAAAAGAAGAAATGGTAGAGCATGTTTTCTTCTCAAAAGAACCATCTAAAACTAATGTGAGGGCTGAGTCTCTGCAACTGACTCTATATCCAAAACAGAACAGTTTCTCTTTGCAGAGTGATCAGTCTTGCTATCAGCTTCATCAGAGCCTCATGGACCCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACGGATAAATCATCAAATACTGGCTCAGTTTCAACCACTCGGCTCTCAATTTCCATTCCCACTGCTTCTAATGACTTCCCCTAA 783 40.87 MFPFTSAQWQELEHQALIFKYIVSGIPIPHDLLFSIKTSTLDSSFTSKLFPLQPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVFKTKPTNDINRRLSNPVFSSTPNGNGISTKDTNTLLLLEPGSYSNRNTDYRYGPKEEMVEHVFFSKEPSKTNVRAESLQLTLYPKQNSFSLQSDQSCYQLHQSLMDPLKQQKRDESQKTDKSSNTGSVSTTRLSISIPTASNDFP 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28346593 28347598 + Sed0024670.1 Sed12g1716 732672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1716 260 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Sed12g1716 260 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 MobiDBLite consensus disorder prediction 126 148 - -
Sed12g1716 260 MobiDBLite consensus disorder prediction 236 260 - -
Sed12g1716 260 Pfam WRC 72 113 IPR014977 -
Sed12g1716 260 MobiDBLite consensus disorder prediction 222 260 - -
Sed12g1716 260 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 PANTHER GROWTH-REGULATING FACTOR 5 2 254 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1716 Sed-Chr12:28346593 Sed14g0947 Sed-Chr14:18554441 4.30E-31 dispersed
Sed12g1716 Sed-Chr12:28346593 Sed03g1822 Sed-Chr3:12067691 2.70E-65 wgd
Sed12g1716 Sed-Chr12:28346593 Sed08g0909 Sed-Chr8:7619195 6.70E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40237 PF08879 WRC 7.80E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1716 - - - 0.0