Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1716 ATGTTTCCTTTCACCTCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATAGTTTCTGGAATTCCTATACCTCATGATCTCCTCTTCAGTATTAAAACAAGTACCTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCCTTACAACCTCAACATGTTGGGTGGAACTATTTGCAGATGAGTTTAGGAAGAAAGATAGACCCAGAACCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAGGCATATCCAGATTCCAAATACTGTGAGAGGCACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTCAAAACAAAACCAACAAATGATATCAACCGCCGCCTATCAAATCCAGTATTTTCTTCAACTCCTAATGGAAATGGCATATCAACCAAAGACACTAATACCCTCTTGCTTCTAGAACCTGGTTCATACTCAAACAGAAACACAGATTACAGGTATGGGCCAAAAGAAGAAATGGTAGAGCATGTTTTCTTCTCAAAAGAACCATCTAAAACTAATGTGAGGGCTGAGTCTCTGCAACTGACTCTATATCCAAAACAGAACAGTTTCTCTTTGCAGAGTGATCAGTCTTGCTATCAGCTTCATCAGAGCCTCATGGACCCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACGGATAAATCATCAAATACTGGCTCAGTTTCAACCACTCGGCTCTCAATTTCCATTCCCACTGCTTCTAATGACTTCCCCTAA 783 40.87 MFPFTSAQWQELEHQALIFKYIVSGIPIPHDLLFSIKTSTLDSSFTSKLFPLQPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVFKTKPTNDINRRLSNPVFSSTPNGNGISTKDTNTLLLLEPGSYSNRNTDYRYGPKEEMVEHVFFSKEPSKTNVRAESLQLTLYPKQNSFSLQSDQSCYQLHQSLMDPLKQQKRDESQKTDKSSNTGSVSTTRLSISIPTASNDFP 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28346593 28347598 + Sed0024670.1 Sed12g1716 732672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1716 260 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Sed12g1716 260 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 MobiDBLite consensus disorder prediction 126 148 - -
Sed12g1716 260 MobiDBLite consensus disorder prediction 236 260 - -
Sed12g1716 260 Pfam WRC 72 113 IPR014977 -
Sed12g1716 260 MobiDBLite consensus disorder prediction 222 260 - -
Sed12g1716 260 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g1716 260 PANTHER GROWTH-REGULATING FACTOR 5 2 254 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1716 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1716 Sed-Chr12:28346593 Sed14g0947 Sed-Chr14:18554441 4.30E-31 dispersed
Sed12g1716 Sed-Chr12:28346593 Sed03g1822 Sed-Chr3:12067691 2.70E-65 wgd
Sed12g1716 Sed-Chr12:28346593 Sed08g0909 Sed-Chr8:7619195 6.70E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0553 . 46 368 GRF Transcription Factor Family AT3G52910 52.7 2.1e-58 224.2
Sed06g0051 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 7.0e-49 192.6
Sed06g2262 . 2 110 GRF Transcription Factor Family AT3G13960 74.3 4.5e-48 189.9
Sed03g1822 . 2 111 GRF Transcription Factor Family AT3G13960 69.6 4.8e-42 169.9
Sed08g0909 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 1.8e-41 167.9
Sed12g1716 . 3 105 GRF Transcription Factor Family AT3G13960 69.9 6.5e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40237 PF08879 WRC 7.80E-21 No_clan Sed TF