Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1723 ATGGCGGATCAGAAAAGAACGGAACAAATTGTTGTACGGATTTTGGATAGTGAAGGAATAGGCGATGCTTGTAAAGATCTCACGAAAACCTCTGTTGATTCTTTTCCTGATTTTGACCTGAAAGAAACTCGGGTTGAGAGCTCTCCTTCTCATGAGATTGCTAGAATGAGTTCCCTTAAACCTCCAAAAATTCCGGTCGAATCGGCAGTTCGGCGCCCATCGTTTGGTCGTTCGTCATTTTCGAAGTCGAAATCGAGGCTAGTAGAGCCACCGTGTCCTGATGATTTGAGTTTGGCTGAAGAAAAGATTCGAGCAAAATCTGGTTCATCATTCTTTAGCGCTCCGAAGATGGACTATAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCGAAAACACCACTGATTGGATCATCTGGAAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACGGCAGAGCTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGATCATTATGATTGAATGGGTTGCATTTTTGTGCTTAACTGGGTGTTTGGTTGCTAGCTTAACAGTAGAAATGTTGGTGACTAAAAAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATCAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATTAATTGTCTGGTTTTCTTGATTGAAAGTAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTGTATGGACTGAGGAAGAGTGTTATAATTTTTATGTGGCTGGCTTTGGTTCTTCTAGCTTGGGGTATATTATTTGATCAAAGCAGCAAGAGATCCAAACAAGGGAATGAGATTCTGAATTATGTTACACGGGCTCTTGGTGCTTCTCTCATTGGAGCCGCTTTATGGCTGGTGAAAACCTTGCTGGTTAAGATACTAGCAGCTTCGTTTCAATGCACAAGATTCTTCGATCGGATTCAAGAATCGATCTTCCATCAGTATATCCTGCGAACCCTTTCGGGACCTCCACTGATGGAGAAGGCTGAGAGGGTCGGGAGAGAAGCGAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAGGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAGTATCCGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATTTCTAATACCATAGAGGATTTAAAAGAGGAAGAGAGTGATAAAAAAGATAAGGAGATCAACAGTGAATGGGAAGCAAGGGCAGCAGCTTACCAAATTTTCAGGAACGTTGCGAAACCCGGCAGCAAGTATATCGACGAAGAGGACCTTTTTCGTTTCATGAGTAAGGAGGAAGTTCATAATATGCTGCCTTTGTTTGAAGGAGCAGTCGAGACTGGGAAGATAAAACGAAAAACTCTGAAGAATTGGCTGGTACATGTTTATGTCGAACGTAAGTCGCTAGCCCACTCGTTAAATGACACCAAGACTGCAATAGAAGAGCTAAACAAGCTTGCTTCAGCAATTGTACTGATTGTGATTATCATTGAATGGCTACTTCTTATGGGCTTCTTGACGACGCAAGTACTCGTCTTCATATCATCACAGCTTTTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTGCATTTGAAGCCATCATTTTTGTATTTGTGATGCATCCATTCGATGTGGGAGATCGATGTGTCGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAAATATGACAATGAGAAGATTTTCTATCCAAATTCTCTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGTCCCGAAATGAGCGATTCGGTCGAATTTTCTGTCGACTTTTCCACATCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAGTAAAATCATACTTGGAAAGCAAACCTAAGTTCTGGCGCCCGAACCACAGCATCATCGTGAAGGAGATCGAGAATGTGAACAAGATGAAAATGGGCCTATACGTCAATCACACCATAAACTTTCAGAACTACGGTGACAAGAGCAGTCGAAGATCGGAACTAGTCTTGGAGTTGAAGAAAATTTTCGAAGATCTCGGGATCAAGTACCATCTGCTACCTCAAGAAGTTGAGCTCAACTATGTGAGTTCCGCAGCTCCTATGGTTCCCCCTTTTCGGAGATGA 2244 41.89 MADQKRTEQIVVRILDSEGIGDACKDLTKTSVDSFPDFDLKETRVESSPSHEIARMSSLKPPKIPVESAVRRPSFGRSSFSKSKSRLVEPPCPDDLSLAEEKIRAKSGSSFFSAPKMDYKEALKSAPITPKTPLIGSSGNEEEDDEEVYRTAELKVKERSGKKLKRIIMIEWVAFLCLTGCLVASLTVEMLVTKKIWGLGLWKWCVLVSVIFCGRLFSQWFINCLVFLIESNFLLKRKVLYFVYGLRKSVIIFMWLALVLLAWGILFDQSSKRSKQGNEILNYVTRALGASLIGAALWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEKAERVGREASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISNTIEDLKEEESDKKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVHNMLPLFEGAVETGKIKRKTLKNWLVHVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTAFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLKYDNEKIFYPNSLLATKPISNFYRSPEMSDSVEFSVDFSTSIESIGALKARVKSYLESKPKFWRPNHSIIVKEIENVNKMKMGLYVNHTINFQNYGDKSSRRSELVLELKKIFEDLGIKYHLLPQEVELNYVSSAAPMVPPFRR 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28408983 28411889 - Sed0025235.1 Sed12g1723 732679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1723 747 FunFam Predicted mechanosensitive ion channel 576 625 - -
Sed12g1723 747 SUPERFAMILY Sm-like ribonucleoproteins 565 625 IPR010920 -
Sed12g1723 747 Coils Coil 405 428 - -
Sed12g1723 747 Pfam Mechanosensitive ion channel, beta-domain 569 625 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1723 747 Gene3D - 576 625 IPR023408 -
Sed12g1723 747 PIRSF Memb_At2g17000 19 745 IPR016688 -
Sed12g1723 747 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 737 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3520 Sed-Chr5:43835163 Sed12g1723 Sed-Chr12:28408983 5.30E-70 dispersed
Sed08g0904 Sed-Chr8:7551552 Sed12g1723 Sed-Chr12:28408983 0.00E+00 dispersed
Sed08g0905 Sed-Chr8:7551552 Sed12g1723 Sed-Chr12:28408983 0.00E+00 dispersed
Sed12g1723 Sed-Chr12:28408983 Sed13g1901 Sed-Chr13:23966687 7.90E-171 dispersed
Sed04g2116 Sed-Chr4:35338657 Sed12g1723 Sed-Chr12:28408983 1.70E-173 transposed
Sed12g1723 Sed-Chr12:28408983 Sed13g1897 Sed-Chr13:23932914 1.20E-142 wgd
Sed12g1723 Sed-Chr12:28408983 Sed08g0903 Sed-Chr8:7551552 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1723 K22048 - csv:101209209 1222.99