Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1727 ATGGCAAACTTTGAATCTTTCTGCTCCTCACATTTATGCCAAACTGATTCAGTTCCTCAATCGAAAACCTTTTCCTCTGTTTCGGCCTCTGACCATTGGATCAAGGCTGCCAACGCTCTCACCCACACCCATTTTGAGGAGGTTTGTCGCATGGTGTCGGAGTTTCAAGAGGCGCAAACTATTGACATTGAAGGCACCACCCTCACTGTTGCTCAGGTCACTGCCATTGCTCGGCGAAGCGATGTTAAAGTTAACCTGAATGATGCTGTGGCTCATGAACGTGTGGCCAAAAGTGCGAATTGGGTTGCTGAGAAAATCTCTCGCGGAATTGATATATATGGAGTAACCACTGGCTTCGGCGCCACATCCCACCGGCGTACGACCAAGACCGCCGACCTCCAGACAGAGCTCATTAGGTTCCTCAATGCTGGAGTCATTGGAAAGGACAACCTTCCATCCAGCTACTCAAAGGCAGCCATGCTTGTTAGGACAAACACGTTGATGCAAGGCTACTCGGGCATTCGTTGGGAAATTCTTGAGGCTGTGGTGAAGCTCATGAATGAGAATTTGATCCCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCATTGTCTTATATTGCTGGTGTTATCACAGGAAGGCATAATTCCAAGGTTACCACCATGGAAGGCGATGAGATCACTGCCATGGAAGCTCTAAAGAGAGCTGGAATTGCAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACTGCTGTCGGGTCTGCCGTTGCCGCCACAGTTTGCTACGATGCCAACCTTTTGGCTCTTTTATCCGTCGTTCTCTCAGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTAACCCATAAGCTCAAGCATCACCCTGGTCAGATCGAATCTGCCGCAGCCATGGAGTTTCTATTGGACCAAAGCGACTTCATGAAAGAAGCAAAAATCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGCTACGCACTTAGAACTTCTCCTCAATGGCTCGGACCTCAAATCGAAGTCATTCGAATGGCAACTCAATCAATTGAAAGGGAAATCAACTCTGTAAACGATAACCCATTAATCGATGTCAACCGAAACCTAGCTCTACATGGAGGAAACTTCCAGGGGACCCCAATAGGCGTCTCCATGGATAATCTTCGAATCGCCATCGCTGCAATTGGAAAACTAATGTTCGCCCAATTCTCCGAACTCGTCTGCGATCATTTCAACAACGGATTACCATCTAATTTAAGCGCAGGGCCAAATCCTAGCTTGGACTATGGCTTCAAAGGGGCAGAAATCGCCATGGCCGCTTACTGCTCCGAGCTTCAATACTTAGCCAACCCTGTCACAACTCATGTCCAAAGTGCAGAACAACACAATCAAGATGTCAACTCTCTAGGTCTAATCTCAGCAAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTAATGTCAGCTACATACATGGTAGCACTCTGCCAGGCAATCGATTTACGACAATACGAAGAAAACATGAGAGAAATCGTAAAAAATTCCCTTCTACAAACAATCAGAAAAACCCTATACGTCGCAGAACGCGGATCTCTCCTCCAATCGCGATTCTGCGAGAAAGATCTACTGCAAGTAATCGAACACGAGCCAGTTTTCTCCTACATCGACGATCCCACCAACACTTCCTATGCCCTAATCCCCAAACTACTGGAAATTCTAGTCCAAAGAGCGTTGAAAAAGGGCGATGCAACATCAAAAAACGATAGTGAAAATGAATCAGGAATCTCCATTTTCAAGCAAATCCCAGGGTTCTTGGAGGAATTAAAGGCGAAATTGGAAAACGATGTTGAAACTGCGAGATTGAGATTCGATAATGGCGATTTCGCAGTTGAAAATAGAATCAAGAAATGCAGTACTTACCCGATCTACCGCTTTGTGAGATCTGAAGTGGGAACTGAAATTCTGAGCGGAGCGAAGAAGGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTAATGAAGGGAAGCTTGGAGATGTTGTGATCAAGTGTTTGAAGTATTAG 2139 45.91 MANFESFCSSHLCQTDSVPQSKTFSSVSASDHWIKAANALTHTHFEEVCRMVSEFQEAQTIDIEGTTLTVAQVTAIARRSDVKVNLNDAVAHERVAKSANWVAEKISRGIDIYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIGKDNLPSSYSKAAMLVRTNTLMQGYSGIRWEILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTMEGDEITAMEALKRAGIAGPFELQAKEGLALVNGTAVGSAVAATVCYDANLLALLSVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDFMKEAKIRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATQSIEREINSVNDNPLIDVNRNLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHFNNGLPSNLSAGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREIVKNSLLQTIRKTLYVAERGSLLQSRFCEKDLLQVIEHEPVFSYIDDPTNTSYALIPKLLEILVQRALKKGDATSKNDSENESGISIFKQIPGFLEELKAKLENDVETARLRFDNGDFAVENRIKKCSTYPIYRFVRSEVGTEILSGAKKVSPGEDIEKVVEAINEGKLGDVVIKCLKY 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28440125 28442706 + Sed0026887.1 Sed12g1727 732683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1727 712 Gene3D - 21 261 IPR024083 -
Sed12g1727 712 PANTHER HISTIDINE AMMONIA-LYASE 27 711 IPR001106 GO:0016841(PANTHER)
Sed12g1727 712 CDD PAL-HAL 66 525 IPR001106 -
Sed12g1727 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Sed12g1727 712 Gene3D - 528 655 IPR023144 -
Sed12g1727 712 Pfam Aromatic amino acid lyase 68 531 IPR001106 -
Sed12g1727 712 SUPERFAMILY L-aspartase-like 32 711 IPR008948 GO:0003824(InterPro)
Sed12g1727 712 NCBIfam phenylalanine ammonia-lyase 31 711 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed12g1727 712 Gene3D Fumarase/aspartase (Central domain) 262 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1727 Sed-Chr12:28440125 Sed14g0399 Sed-Chr14:4116312 4.50E-240 dispersed
Sed12g1727 Sed-Chr12:28440125 Sed03g2015 Sed-Chr3:14065462 7.60E-240 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1727 K10775 - csv:101205510 1206.82