Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1737 ATGAGGAAGGGAGGATTCAGCAGCAACCTCAATCTGAAGCTCAATCTCCCTCAAGAAGAACAATCCATAGCCAACTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGACATGGAGTTCGGATTGTTTCTCAGACCGAACCTCAAGCACCACCTCCTATTATGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCCTACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTACGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGCTCTTTAGCTGATTTTTTGCAAAAGGTTAAAAAAATTCAAGAACCATATCTTGCAGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTCGGCGTCAGTACGATTATGGCAAGCACATATGGAGAAGCTAATACTTTCGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTTGGAGAAAGACATGACAATAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCCACTGGCAAATTCCCTTTTTCTCCACCAGAGCAAGAGGAAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCTGACCAATTTACTCCAAACTTCTGCTCCTTCATTTCTGCATGTTTGAAAAAGGACCCAAAGGATAGATTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTTAATGATCCAGGATCTCAACTTGCAACTTTCTAA 1068 40.82 MRKGGFSSNLNLKLNLPQEEQSIANFLTQSGTFKDGDLLVNRHGVRIVSQTEPQAPPPIMPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESYRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLQKVKKIQEPYLAALCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSTIMASTYGEANTFVGTYNYMSPERIVGERHDNKSDIWSLGLILLECATGKFPFSPPEQEEGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLKKDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDPGSQLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28490804 28495376 + Sed0006236.3 Sed12g1737 732693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1737 355 Gene3D Transferase(Phosphotransferase) domain 1 151 352 - -
Sed12g1737 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1737 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Sed12g1737 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1737 355 SUPERFAMILY Protein kinase-like (PK-like) 51 337 IPR011009 -
Sed12g1737 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1737 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1737 355 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Sed12g1737 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 347 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed12g1737 355 CDD PKc_MAPKK_plant_like 69 335 - -
Sed12g1737 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Sed12g1737 355 Gene3D Phosphorylase Kinase; domain 1 57 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1735 Sed-Chr12:28490804 Sed12g1737 Sed-Chr12:28490804 1.70E-208 dispersed
Sed12g1737 Sed-Chr12:28490804 Sed12g0231 Sed-Chr12:1311267 5.10E-35 dispersed
Sed12g1736 Sed-Chr12:28490804 Sed12g1737 Sed-Chr12:28490804 1.70E-208 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80008 PF00069 Pkinase 1.40E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1737 K20603 - csv:101204545 659.833