Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1747 ATGGAGAATCATCAGGATGAAGAAATTGGAGCTGTGGGTTCCAGCTTGACTTTGGAGAAGGTTGCTGTCGCCAAACAGTACATTGAGAATCATTACAAGGCTCAGCATAAGCACATTCAAGAACGTAAACAGAGGCGCTCCGTGCTAGAAAGGAAGTTGGCATCTTCAGATGTCCCAGAAGAAGAACAACTTAATATATTGAAGGATTTGGAGCGGACAGAGACTCGATACATGCGGCTGAAAAGACATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATTATTGGGCGAGGTGCATTCGGGGAGGTCAGACTTTGTCGAGAGAAGAAAACAGGCAACATATTTGCCATGAAGAAGCTGAAAAAATCAGAAATGCTCAGCAGAGGTCAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAGGTTGCAAGTCACTGCATTGTGAAGCTCTATTATTCCTTCCAAGATGCTGAATTCTTGTATCTGATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACAGAAACTGTTGCTAGATTTTACGTTGCGCAAAGCGTTCTGGCTATAGAGTCGATTCATAAACATAACTATATCCACAGAGACATAAAACCTGATAACCTTCTGTTAGACCAAAGAGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTCGACTGTACAAATCTGTCATCTATAAATGAAAATGAAGTCCTTGATGATGATAACTTGAATGACACAGTCGATGTGGACGGGAGCGTTCCAGGTAAAACAAGTGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTAAACATTGGCAGATTAACAGAAGGACACTGGCATTTTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAACAAGGATACAGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCCGACAATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTGAAATTTCCTGATGAGAAAAGACTATCACCTGAAGCAAAAGACCTAATTAGCAGACTACTTTGCGATGCTAAGCATAGGCTTGGCACTGGAGGTGCCGACCAAATAAAGGCTCATCCTTGGTTCAAAGATACCAAGTGGGACAGTCTCTATGAAATAGATGCAGCATTTAAGCCTGAAGTCAATGGGGAACTTGATACGCAGAATTTTATGCAACTTGATGAGGTTGATCCACCGCCAATTAGAACGGGATCGGGTCCATTAAGAAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCACCACCATTCATTTGATGTGAAGTCAAGCACCACCCCGCTTCGGACTTCGTCTGTCGACTCTACACAAAGCGACTCAGCATTGAACTACTCAGAAGATGATAGGGAAGCCAGATTAGCATCACCAGGGGATGCTTTGTCAAAGTAA 1551 42.36 MENHQDEEIGAVGSSLTLEKVAVAKQYIENHYKAQHKHIQERKQRRSVLERKLASSDVPEEEQLNILKDLERTETRYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIFAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEFLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDQRGHMKLSDFGLCKPLDCTNLSSINENEVLDDDNLNDTVDVDGSVPGKTSGRRWKSPLEQLKHWQINRRTLAFSTVGTPDYIAPEVLLKQGYSVECDWWSLGAIMYEMLVGYPPFYSDNPVTTCRKIVHWKNHLKFPDEKRLSPEAKDLISRLLCDAKHRLGTGGADQIKAHPWFKDTKWDSLYEIDAAFKPEVNGELDTQNFMQLDEVDPPPIRTGSGPLRKMLLTPKDLSFVGYTYKNFEAVKGHHHSFDVKSSTTPLRTSSVDSTQSDSALNYSEDDREARLASPGDALSK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28512200 28524701 - Sed0002280.1 Sed12g1747 732703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1747 516 SMART serkin_6 90 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 FunFam Non-specific serine/threonine protein kinase 296 415 - -
Sed12g1747 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 398 470 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 SUPERFAMILY Protein kinase-like (PK-like) 72 445 IPR011009 -
Sed12g1747 516 FunFam Non-specific serine/threonine protein kinase 174 241 - -
Sed12g1747 516 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524(InterPro)
Sed12g1747 516 MobiDBLite consensus disorder prediction 477 496 - -
Sed12g1747 516 SMART pkinase_C_6 398 462 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 CDD MobB_NDR_LATS-like 24 85 - -
Sed12g1747 516 FunFam Non-specific serine/threonine protein kinase 416 426 - -
Sed12g1747 516 Pfam Protein kinase domain 293 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 Pfam Protein kinase domain 92 239 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 Gene3D Phosphorylase Kinase; domain 1 81 175 - -
Sed12g1747 516 MobiDBLite consensus disorder prediction 474 516 - -
Sed12g1747 516 FunFam Non-specific serine/threonine protein kinase 51 173 - -
Sed12g1747 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 ProSiteProfiles Protein kinase domain profile. 90 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1747 516 Gene3D Transferase(Phosphotransferase) domain 1 176 414 - -
Sed12g1747 516 CDD STKc_NDR_like 88 461 - -
Sed12g1747 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 466 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed12g1747 516 Pfam Protein kinase C terminal domain 416 460 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1747 Sed-Chr12:28512200 Sed13g1884 Sed-Chr13:23834491 2.10E-202 dispersed
Sed12g1747 Sed-Chr12:28512200 Sed12g1748 Sed-Chr12:28514315 1.10E-251 tandem
Sed12g1747 Sed-Chr12:28512200 Sed13g1883 Sed-Chr13:23834491 4.30E-216 wgd
Sed12g1747 Sed-Chr12:28512200 Sed08g0887 Sed-Chr8:7428948 2.80E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80009 PF00069 Pkinase 1.30E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1747 K08790 - csv:101208238 904.049