Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1748 ATGGAGAATCATCAGGATGAAGAAATTGGAGCTGTGGGTTCCAGCTTGACTTTGGAGAAGGTTGCTGTCGCCAAACAGTACATTGAGAATCATTACAAGGCTCAGCATAAGCACATTCAAGAACGTAAACAGAGGCGCTCCGTGCTAGAAAGGAAGTTGGCATCTTCAGATGTCCCAGAAGAAGAACAACTTAATATATTGAAGGATTTGGAGCGGACAGAGACTCGATACATGCGGCTGAAAAGACATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATTATTGGGCGAGGTGCATTCGGGGAGGTCAGACTTTGTCGAGAGAAGAAAACAGGCAACATATTTGCCATGAAGAAGCTGAAAAAATCAGAAATGCTCAGCAGAGGTCAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAGGTTGCAAGTCACTGCATTGTGAAGCTCTATTATTCCTTCCAAGATGCTGAATTCTTGTATCTGATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACAGAAACTGTTGCTAGATTTTACGTTGCGCAAAGCGTTCTGGCTATAGAGTCGATTCATAAACATAACTATATCCACAGAGACATAAAACCTGATAACCTTCTGTTAGACCAAAGAGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTCGACTGTACAAATCTGTCATCTATAAATGAAAATGAAGTCCTTGATGATGATAACTTGAATGACACAGTCGATGTGGACGGGAGCGTTCCAGGTAAAACAAGTGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTAAACATTGGCAGATTAACAGAAGGACACTGGCATTTTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAACAAGGATACAGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCCGACAATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTGAAATTTCCTGATGAGAAAAGACTATCACCTGAAGCAAAAGACCTAATTAGCAGACTACTTTGCGATGCTAAGCATAGGCTTGGCACTGGAGGTGCCGACCAAATAAAGGCTCATCCTTGGTTCAAAGATACCAAGTGGGACAGTCTCTATGAAATAGATGCAGCATTTAAGCCTGAAGTCAATGGGGAACTTGATACGCAGAATTTTATGCAACTTGATGAGGTGAGGTCTTATAGAGAATCTTTGGATTTTGTTTAG 1326 41.7 MENHQDEEIGAVGSSLTLEKVAVAKQYIENHYKAQHKHIQERKQRRSVLERKLASSDVPEEEQLNILKDLERTETRYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIFAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEFLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDQRGHMKLSDFGLCKPLDCTNLSSINENEVLDDDNLNDTVDVDGSVPGKTSGRRWKSPLEQLKHWQINRRTLAFSTVGTPDYIAPEVLLKQGYSVECDWWSLGAIMYEMLVGYPPFYSDNPVTTCRKIVHWKNHLKFPDEKRLSPEAKDLISRLLCDAKHRLGTGGADQIKAHPWFKDTKWDSLYEIDAAFKPEVNGELDTQNFMQLDEVRSYRESLDFV 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28514315 28524701 - Sed0002280.2 Sed12g1748 732704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1748 441 Gene3D Phosphorylase Kinase; domain 1 416 426 - -
Sed12g1748 441 ProSiteProfiles AGC-kinase C-terminal domain profile. 398 441 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 SMART serkin_6 90 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524(InterPro)
Sed12g1748 441 Pfam Protein kinase domain 92 239 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 Pfam Protein kinase domain 293 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 CDD MobB_NDR_LATS-like 24 85 - -
Sed12g1748 441 SUPERFAMILY Protein kinase-like (PK-like) 71 431 IPR011009 -
Sed12g1748 441 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 430 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed12g1748 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 Gene3D Transferase(Phosphotransferase) domain 1 174 241 - -
Sed12g1748 441 ProSiteProfiles Protein kinase domain profile. 90 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1748 441 FunFam Non-specific serine/threonine protein kinase 296 415 - -
Sed12g1748 441 CDD STKc_NDR_like 88 431 - -
Sed12g1748 441 Gene3D Phosphorylase Kinase; domain 1 64 173 - -
Sed12g1748 441 FunFam Non-specific serine/threonine protein kinase 416 426 - -
Sed12g1748 441 FunFam Non-specific serine/threonine protein kinase 51 173 - -
Sed12g1748 441 Gene3D Transferase(Phosphotransferase) domain 1 289 415 - -
Sed12g1748 441 FunFam Non-specific serine/threonine protein kinase 174 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1748 Sed-Chr12:28514315 Sed13g1883 Sed-Chr13:23834491 3.20E-196 dispersed
Sed12g1747 Sed-Chr12:28512200 Sed12g1748 Sed-Chr12:28514315 1.10E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80010 PF00069 Pkinase 9.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1748 K08790 - csv:101208238 774.622