Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1762 ATGGAGGTTTTGATTCTTCAGCTGCTGATTCTTTGTTTCATTGCTAATGCTTCTGAGCTTCGAGAAATTCCGGGATTTGGAAATTCTCCACCACCTTTAAGTTTTTCTGCATTTCCTCCAGTTGAAGGAACTCCTGGTGAAGTCCAACATGATAAGTCATTGATAAGCAATGGACCGAGCTCGGCGCCCCTGCAATATGAGTCAAATTTGCAACCGCCAATTGCGCCGGTTCCGCTGTCTGATACAATCAAAGGGTTTATACCATCTGCTTCACCTGCTGCTCCGACCGAAATGCCACCATTCAATAGTGTGGTTCGTCCGCCTTTACCAGTTAAACCAAATGCACCATGGATTTCATCGAGTGCACCAGCACCAGTGAATGAGGTTCCTCTGCCAATGGTTCCTCCAGGTCCAGTTGTGCCATCTTCAAAATCTCCACAATATCCTCCAGCAAGTTCCCCACACGAGCAAACAAACTTTTCATCAAGTTCTCATCAAAGCACTTCACCAAATGTAGCTCCCATCCCTGAGCCAATTTCTCCAGCAAGCAAGGAGCCTAAGAACTCACCTGCTAATCTTCCAGTAGAGCCTGAAAGACCTCCATCCATATGGCCAGAGCCTGATATCTCTCCAGCGGTATCTATTTCTCCAAAAGCTGGTGACAGAAAAAGATTAGAAGCACCAGCAGCTGCACCTTATAATACATTGCCCAAGTATATGCGACCGTTGAATCCTTCGCCAGACGAAGCTCCTTCCACTCATAATGCTGCTCAGCAGCCTACTCTTTCACCACAAAAGGCTCCATTTCATAGAGCAAATCTTTCTCCAACATCTCCTCCTCTGTCCTCAAAATATAAACATCTTAGAAGAAGGAATCATATCATCAGTCACGCTCCTGCGCCATCATATCCAATTTCCTCTCGCACGATAGAAACGCCAGGTCCGGTTGTTTCTACCGCACAACATTCGCACAGCCGAGGACACTATGCTCCACCGCCGGAATCAGAACCATCGTCAATATCTCCATCGCCTTGTGATCCTTCTCCTTCACCACACCAAAAAATAACTGGGCATACTAAAAGACATTTGTATCCACCTAAAGCTTCACCATTGAAACCTTCGGAAAACAGTCCGAAGATGCCTCCGCGACCACCAATACATGCATTGCCTCCTCCACCTCCCAATGAAGATTGTTCAACTACCCTATGCACTGAGCCATATACAAATACTCCCCCAGGGTCTCCCTGTGGTTGTGTTTGGCCCATGCAAGTTGGACTTCGTCTCAGCGTTTCGCTATATACCTTCTTCCCTCTAGTTTCAGAGCTGGCAGCAGAAATTGCTGCTGGAGTGTTTGTAAAGCAAAGTCAAGTTCGCATTATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACCGTTGTTCTTATTGACTTAGTCCCACTTGGGGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAAGTTTCTATCAAAGCTTCCTATTTTGGGAACTATGATGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTGCTGCAGATTCAGGACTAGATAATGAACCTTATTTGAGTAATGGTAACGATGCAAGGACAGTAAAACCGATCGGCGTTGATGTGCACAACAGACAGCAGAAAGATAGGATAAGTGGTGGTATGATTGCCATTATCGCCCTATCAACTACTGTTGCAGTGGCCTTATGTATTGCTACTGCTTGGATTTTGATCTTCAGACGCAATGGTGGCCTTTGCCAACCAAAACCAACTCCACATGTTTCGTTATCCTCCCTCAATAAACCATCAGGTGTTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCTTTAGATCCAGCATTGCCACAGGATCAGCAAAGACATTCAGTGCCTCTGACATAGAGATAGCCACAAATAATTTTGATCCATCAAGAATATTGGGGGAGGGAGGGTTTGGACGTGTTTACCGCGGCACCCTCAATGATGGCACCGAGGTAGCAGTTAAAGTTCTCAAGAGAGATGATCATCAAGGCGGTCGAGAATTCTTGGCCGAAGTTGAAATGCTTAGCCGGCTCCACCACAGAAATTTGGTTAAGTTGATTGGAATATGTACCGAGGAGCATAACCGCTCCCTTGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTAGATAACGAAACTGCACCACTTGACTGGGGTGCTCGGATGAAGATAGCACTCGGTGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATAGAGACTTCAAATCCAGTAATATCTTGCTAGAACGTGATTATATGCCAAAAGTTTCTGACTTCGGGTTGGCTCGAACTGCACAGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGGTATGTGGCTCCAGAGTATGCAATGACTGGCCATCTACTCGTGAAGAGTGATGTTTATAGTTACGGGGTCGTTCTTCTCGAGTTACTAACTGGCAGAAAACCAGTAGATATGTTGCAACCGCCCGGTGAAGAAAATCTTGTTAGTTGGGCTCGTCCACTCCTCACTAGCAAAGAAGGCTTAGATATTATAATTGACAAATCAATAGATTCTAATGTTCCTTTTGAAAACATTGCCAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCGCATCGACCCTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAGTGCAATGAGGCTCAAGAAGCAAGCTCACAAGCTGATTCGAGCTCCGAGAATTCATCTGTGGATATGGACGATGAGGCATCAAGTTCAAGACACATGCTAGATTCCTTTCATAGTGAATATTTACTATCTAACTCAATTTCAGATCGTGACATAATCGATACACATCTCTCAGTTTCAGACTTGTTGAATACTTCCATCGATATTCGAATGCAAGAGTCTAGATCACTCAAAAGATGCTCCAGTTCTGATCCTCTTAGAATTGGGAAAGTCAAAAGACACTTTTGGCAAAGAATGAGAAGATATTCAGGAAGTAGCATAAGTGAACATGGAATGCCAAGATCATGGTCGGGTTCTACATAA 3171 44.65 MEVLILQLLILCFIANASELREIPGFGNSPPPLSFSAFPPVEGTPGEVQHDKSLISNGPSSAPLQYESNLQPPIAPVPLSDTIKGFIPSASPAAPTEMPPFNSVVRPPLPVKPNAPWISSSAPAPVNEVPLPMVPPGPVVPSSKSPQYPPASSPHEQTNFSSSSHQSTSPNVAPIPEPISPASKEPKNSPANLPVEPERPPSIWPEPDISPAVSISPKAGDRKRLEAPAAAPYNTLPKYMRPLNPSPDEAPSTHNAAQQPTLSPQKAPFHRANLSPTSPPLSSKYKHLRRRNHIISHAPAPSYPISSRTIETPGPVVSTAQHSHSRGHYAPPPESEPSSISPSPCDPSPSPHQKITGHTKRHLYPPKASPLKPSENSPKMPPRPPIHALPPPPPNEDCSTTLCTEPYTNTPPGSPCGCVWPMQVGLRLSVSLYTFFPLVSELAAEIAAGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYDVLYVRYPGLPQSPPAADSGLDNEPYLSNGNDARTVKPIGVDVHNRQQKDRISGGMIAIIALSTTVAVALCIATAWILIFRRNGGLCQPKPTPHVSLSSLNKPSGVGGSVMATMPSSASLSFRSSIATGSAKTFSASDIEIATNNFDPSRILGEGGFGRVYRGTLNDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEEHNRSLVYELIPNGSVESHLHGVDNETAPLDWGARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLERDYMPKVSDFGLARTAQDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMLQPPGEENLVSWARPLLTSKEGLDIIIDKSIDSNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNEAQEASSQADSSSENSSVDMDDEASSSRHMLDSFHSEYLLSNSISDRDIIDTHLSVSDLLNTSIDIRMQESRSLKRCSSSDPLRIGKVKRHFWQRMRRYSGSSISEHGMPRSWSGST 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28729590 28736141 + Sed0025053.1 Sed12g1762 732718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1762 1056 Gene3D Transferase(Phosphotransferase) domain 1 734 960 - -
Sed12g1762 1056 FunFam Receptor-like serine/threonine-protein kinase ALE2 734 952 - -
Sed12g1762 1056 Pfam Protein tyrosine and serine/threonine kinase 662 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1762 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1762 1056 MobiDBLite consensus disorder prediction 944 959 - -
Sed12g1762 1056 SUPERFAMILY Protein kinase-like (PK-like) 638 931 IPR011009 -
Sed12g1762 1056 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524(InterPro)
Sed12g1762 1056 MobiDBLite consensus disorder prediction 193 207 - -
Sed12g1762 1056 FunFam receptor-like serine/threonine-protein kinase ALE2 632 733 - -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 248 282 - -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 944 965 - -
Sed12g1762 1056 ProSiteProfiles Protein kinase domain profile. 658 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1762 1056 MobiDBLite consensus disorder prediction 149 173 - -
Sed12g1762 1056 Gene3D Phosphorylase Kinase; domain 1 630 733 - -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 371 394 - -
Sed12g1762 1056 CDD STKc_IRAK 664 932 - -
Sed12g1762 1056 PANTHER OS01G0750732 PROTEIN 395 976 IPR050885 -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 137 394 - -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 335 349 - -
Sed12g1762 1056 MobiDBLite consensus disorder prediction 302 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0157 Sed-Chr5:952259 Sed12g1762 Sed-Chr12:28729590 3.00E-173 dispersed
Sed05g0158 Sed-Chr5:952259 Sed12g1762 Sed-Chr12:28729590 3.00E-173 dispersed
Sed05g1911 Sed-Chr5:32475863 Sed12g1762 Sed-Chr12:28729590 2.50E-86 dispersed
Sed06g1229 Sed-Chr6:35736122 Sed12g1762 Sed-Chr12:28729590 1.70E-101 dispersed
Sed09g1684 Sed-Chr9:40185063 Sed12g1762 Sed-Chr12:28729590 3.10E-206 dispersed
Sed12g1762 Sed-Chr12:28729590 Sed13g1171 Sed-Chr13:15483185 1.60E-84 dispersed
Sed12g1762 Sed-Chr12:28729590 Sed12g1763 Sed-Chr12:28729590 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80011 PF07714 PK_Tyr_Ser-Thr 3.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1762 - - - 0.0