Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1763 ATGGAGGTTTTGATTCTTCAGCTGCTGATTCTTTGTTTCATTGCTAATGCTTCTGAGCTTCGAGAAATTCCGGGATTTGGAAATTCTCCACCACCTTTAAGTTTTTCTGCATTTCCTCCAGTTGAAGGAACTCCTGGTGAAGTCCAACATGATAAGTCATTGATAAGCAATGGACCGAGCTCGGCGCCCCTGCAATATGAGTCAAATTTGCAACCGCCAATTGCGCCGGTTCCGCTGTCTGATACAATCAAAGGGTTTATACCATCTGCTTCACCTGCTGCTCCGACCGAAATGCCACCATTCAATAGTGTGGTTCGTCCGCCTTTACCAGTTAAACCAAATGCACCATGGATTTCATCGAGTGCACCAGCACCAGTGAATGAGGTTCCTCTGCCAATGGTTCCTCCAGGTCCAGTTGTGCCATCTTCAAAATCTCCACAATATCCTCCAGCAAGTTCCCCACACGAGCAAACAAACTTTTCATCAAGTTCTCATCAAAGCACTTCACCAAATGTAGCTCCCATCCCTGAGCCAATTTCTCCAGCAAGCAAGGAGCCTAAGAACTCACCTGCTAATCTTCCAGTAGAGCCTGAAAGACCTCCATCCATATGGCCAGAGCCTGATATCTCTCCAGCGGTATCTATTTCTCCAAAAGCTGGTGACAGAAAAAGATTAGAAGCACCAGCAGCTGCACCTTATAATACATTGCCCAAGTATATGCGACCGTTGAATCCTTCGCCAGACGAAGCTCCTTCCACTCATAATGCTGCTCAGCAGCCTACTCTTTCACCACAAAAGGCTCCATTTCATAGAGCAAATCTTTCTCCAACATCTCCTCCTCTGTCCTCAAAATATAAACATCTTAGAAGAAGGAATCATATCATCAGTCACGCTCCTGCGCCATCATATCCAATTTCCTCTCGCACGATAGAAACGCCAGGTCCGGTTGTTTCTACCGCACAACATTCGCACAGCCGAGGACACTATGCTCCACCGCCGGAATCAGAACCATCGTCAATATCTCCATCGCCTTGTGATCCTTCTCCTTCACCACACCAAAAAATAACTGGGCATACTAAAAGACATTTGTATCCACCTAAAGCTTCACCATTGAAACCTTCGGAAAACAGTCCGAAGATGCCTCCGCGACCACCAATACATGCATTGCCTCCTCCACCTCCCAATGAAGATTGTTCAACTACCCTATGCACTGAGCCATATACAAATACTCCCCCAGGGTCTCCCTGTGGTTGTGTTTGGCCCATGCAAGTTGGACTTCGTCTCAGCGTTTCGCTATATACCTTCTTCCCTCTAGTTTCAGAGCTGGCAGCAGAAATTGCTGCTGGAGTGTTTGTAAAGCAAAGTCAAGTTCGCATTATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACCGTTGTTCTTATTGACTTAGTCCCACTTGGGGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAAGTTTCTATCAAAGCTTCCTATTTTGGGAACTATGATGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTGCTGCAGATTCAGGACTAGATAATGAACCTTATTTGAGTAATGGTAACGATGCAAGGACAGTAAAACCGATCGGCGTTGATGTGCACAACAGACAGCAGAAAGATAGGATAAGTGGTGGTATGATTGCCATTATCGCCCTATCAACTACTGTTGCAGTGGCCTTATGTATTGCTACTGCTTGGATTTTGATCTTCAGACGCAATGGTGGCCTTTGCCAACCAAAACCAACTCCACATGTTTCGTTATCCTCCCTCAATAAACCATCAGGTGTTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCTTTAGATCCAGCATTGCCACAGGATCAGCAAAGACATTCAGTGCCTCTGACATAGAGATAGCCACAAATAATTTTGATCCATCAAGAATATTGGGGGAGGGAGGGTTTGGACGTGTTTACCGCGGCACCCTCAATGATGGCACCGAGGTAGCAGTTAAAGTTCTCAAGAGAGATGATCATCAAGGCGGTCGAGAATTCTTGGCCGAAGTTGAAATGCTTAGCCGGCTCCACCACAGAAATTTGGTTAAGTTGATTGGAATATGTACCGAGGAGCATAACCGCTCCCTTGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTAGATAACGAAACTGCACCACTTGACTGGGGTGCTCGGATGAAGATAGCACTCGGTGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATAGAGACTTCAAATCCAGTAATATCTTGCTAGAACGTGATTATATGCCAAAAGTTTCTGACTTCGGGTTGGCTCGAACTGCACAGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGGTATAGTATTAGAAGTTCTTTTAGATTTCACTCAGCTAAGTACGGTAAAGAAGAGACAAGTTGA 2541 45.18 MEVLILQLLILCFIANASELREIPGFGNSPPPLSFSAFPPVEGTPGEVQHDKSLISNGPSSAPLQYESNLQPPIAPVPLSDTIKGFIPSASPAAPTEMPPFNSVVRPPLPVKPNAPWISSSAPAPVNEVPLPMVPPGPVVPSSKSPQYPPASSPHEQTNFSSSSHQSTSPNVAPIPEPISPASKEPKNSPANLPVEPERPPSIWPEPDISPAVSISPKAGDRKRLEAPAAAPYNTLPKYMRPLNPSPDEAPSTHNAAQQPTLSPQKAPFHRANLSPTSPPLSSKYKHLRRRNHIISHAPAPSYPISSRTIETPGPVVSTAQHSHSRGHYAPPPESEPSSISPSPCDPSPSPHQKITGHTKRHLYPPKASPLKPSENSPKMPPRPPIHALPPPPPNEDCSTTLCTEPYTNTPPGSPCGCVWPMQVGLRLSVSLYTFFPLVSELAAEIAAGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYDVLYVRYPGLPQSPPAADSGLDNEPYLSNGNDARTVKPIGVDVHNRQQKDRISGGMIAIIALSTTVAVALCIATAWILIFRRNGGLCQPKPTPHVSLSSLNKPSGVGGSVMATMPSSASLSFRSSIATGSAKTFSASDIEIATNNFDPSRILGEGGFGRVYRGTLNDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEEHNRSLVYELIPNGSVESHLHGVDNETAPLDWGARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLERDYMPKVSDFGLARTAQDEESRHISTRVMGTFGYSIRSSFRFHSAKYGKEETS 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28729590 28736141 + Sed0025053.2 Sed12g1763 732719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1763 846 Pfam Protein tyrosine and serine/threonine kinase 662 815 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1763 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1763 846 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524(InterPro)
Sed12g1763 846 FunFam Protein kinase superfamily protein 734 808 - -
Sed12g1763 846 MobiDBLite consensus disorder prediction 193 207 - -
Sed12g1763 846 FunFam receptor-like serine/threonine-protein kinase ALE2 632 733 - -
Sed12g1763 846 MobiDBLite consensus disorder prediction 248 282 - -
Sed12g1763 846 PANTHER OS01G0750732 PROTEIN 395 827 IPR050885 -
Sed12g1763 846 Gene3D Transferase(Phosphotransferase) domain 1 734 834 - -
Sed12g1763 846 MobiDBLite consensus disorder prediction 149 173 - -
Sed12g1763 846 MobiDBLite consensus disorder prediction 371 394 - -
Sed12g1763 846 SUPERFAMILY Protein kinase-like (PK-like) 638 827 IPR011009 -
Sed12g1763 846 MobiDBLite consensus disorder prediction 137 394 - -
Sed12g1763 846 MobiDBLite consensus disorder prediction 335 349 - -
Sed12g1763 846 ProSiteProfiles Protein kinase domain profile. 658 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1763 846 MobiDBLite consensus disorder prediction 302 325 - -
Sed12g1763 846 Gene3D Phosphorylase Kinase; domain 1 630 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1763 Sed-Chr12:28729590 Sed05g1269 Sed-Chr5:23643878 1.60E-58 dispersed
Sed12g1762 Sed-Chr12:28729590 Sed12g1763 Sed-Chr12:28729590 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80012 PF07714 PK_Tyr_Ser-Thr 1.20E-34 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1763 - - - 0.0