Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1770 ATGAGGTTACCGTTCTCTGCAATTCTCGTCTCCTTGCTCTTCTTTCATCTCCTTCTTTGCTTCGCTACTTTCCCTTCCCTTTCCATCTCCCTCGTCACCGTCGGTGACTCCGACGACGTCCCCGTCGAGATCAATGCTACTGCCGACTCCAACTCCTCGAGATCCGGCGACGACAGTTTCGCTAACATTATCGATCGGGCTCTCGAGAGGGAGTTTATTGAGAATGAGAAGAGTGATGAAGTTCCGGATGCTGGCAGCTTCAACAACAGCGTTGCTGAGAAGCAGGCAGTTTTGGAAACTGTTGCCAGAGTTAAGTCAAAGAAGAATGATTCGAAAGAGGAGAAATCATTTCAATTCCATGATGTCTTCAACTTAGATAATGAGAATAGAGCAGAAGACATGCCCACATTGATTGATCGAAAGGACAATGTCTTTATCATATCCAATCTCAAGTCGAAGTATCCAGTGCTCCAATTGGATTTAAGATTGATTTCGGATCTAGTTGTTGTTATTGTTTCTGCAACTTGTGGTGGCATTGCTTTTGCTTGTGCAGGACAACCGGTCTTTACTGGATACCTGTTGGCTGGATCTCTCATTGGACCCGGAGGTTTAAGCTTTGTCAGTGAAATGGTGCAAGTTGAGACAGTTGCTCAGTTTGGTGTGATCTTCCTTCTTTTTGCATTGGGCTTGGAGTTCTCCTCTGCAAAACTTCGTGTTGTTCGAGCAGTGGCTGTTCTTGGTGGATTGCTCCAGATTTTCCTTTTTATGTGCTTGTGTGGAATTACGGCTTCGCTATGTGGCGGTAAATCTTCAGAGGGGGTATTCGTTGGTGCATTCCTGTCTATGTCTTCTACTGCAGTGGTCTTGAAATTTTTAATGGAACGAAATAGCGTCAATGCCCTTCATGGTCAGGTGACTATTGGAACTCTTATTCTTCAGGATTGTGCCGTAGGCTTGCTGTTTGCTCTCCTTCCAATTCTTGGTGGAACCTCTGGTGTTCTTCAAGGAGTTCTGTCCATGACTAAGTCGCTGGTGGTCTTGATTACCTTTTTGATTTTTTTGACAATATTATCTCGCACATGTGTGCCGTGGTTCCTTAAACTTATGATTAGCCTATCATCTCAGACTAATGAGCTCTATCAGTTGGCAGCTGTTGCATTCTGCTTACTTGTAGCCTGGTGCAGTGATAAACTTGGTTTAAGCCTTGAATTGGGTTCCTTTGCTGCGGGTGTTATGATATCAACTACTGATCTTGCTCAGCACACACTTGAACAGGTTGAGCCCATTCGCAATTTCTTTGCTGCTCTTTTTCTTGCCAGCATTGGCATGCTTATTCACGTTCATTTCCTATGGAACCACATTGATATTTTACTTGCTGCTGTAATATTGGTCATCCTTATAAAGACTGTAGTGGTTGCTACTGTTGTCAAGGGATTCGGGTACAACAACAAGACTTCACTTCTGGTTGGGATGTCACTAGCTCAAATTGGGGAATTTGCTTTTGTCCTTCTAAGTCGTGCCTCTAATCTTCATCTTGTCGAGGGAAAATTGTATATACTGCTGCTTGGGACAACTGCACTTAGTCTGGTAACTACCCCATTGCTTTTCAAGCTTATTCCTGCTATGGTACGTATTGGAGTGTTGTTGCGATGGTTTTCACCCGATAGTTCGAGTGAGATTGGGTTCAAAGGAGACGGATATCGAACTGATGGTGTCAAGCGTATCACATTGGTGGTTCAAGACTCTCATGTTTCATGA 1758 44.03 MRLPFSAILVSLLFFHLLLCFATFPSLSISLVTVGDSDDVPVEINATADSNSSRSGDDSFANIIDRALEREFIENEKSDEVPDAGSFNNSVAEKQAVLETVARVKSKKNDSKEEKSFQFHDVFNLDNENRAEDMPTLIDRKDNVFIISNLKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVFTGYLLAGSLIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSSAKLRVVRAVAVLGGLLQIFLFMCLCGITASLCGGKSSEGVFVGAFLSMSSTAVVLKFLMERNSVNALHGQVTIGTLILQDCAVGLLFALLPILGGTSGVLQGVLSMTKSLVVLITFLIFLTILSRTCVPWFLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHIDILLAAVILVILIKTVVVATVVKGFGYNNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYILLLGTTALSLVTTPLLFKLIPAMVRIGVLLRWFSPDSSSEIGFKGDGYRTDGVKRITLVVQDSHVS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28822994 28839847 + Sed0022659.1 Sed12g1770 732726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1770 585 Pfam Sodium/hydrogen exchanger family 171 537 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed12g1770 585 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 45 563 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Sed12g1770 585 Gene3D - 161 545 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1765 Sed-Chr8:32503088 Sed12g1770 Sed-Chr12:28822994 9.00E-247 dispersed
Sed12g0182 Sed-Chr12:1036950 Sed12g1770 Sed-Chr12:28822994 1.10E-33 dispersed
Sed12g0183 Sed-Chr12:1036950 Sed12g1770 Sed-Chr12:28822994 1.10E-33 dispersed
Sed12g1770 Sed-Chr12:28822994 Sed02g1642 Sed-Chr2:51736712 5.50E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1770 K26735 - csv:101208614 988.793