Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1774 ATGGAGAAGGGTCATCTTGATGTGGCTGGCAAAGTGGTGGTCGTCGCCATTAAAGCCACCTCGAAGGAGGTTTCTAAGGCTGCTCTGGTTTGGGCTTTGACTCATGTTGTTCAGCATGGAGATCGTATTAAGCTGCTTGTGGTTATCCCTTCTCAACACTCAAGTAAATGGATGCGGGGATTTTCCCGATTAACCAGCGACTGTGCGATCGGTCATCTGAGAACTGCAGCAGGAACCCTTTCAGATCAGAAGGATGACATTGTGCATTCATGTTCTCAAATGGTACATCAGCTGCATGGTGCATATGAACCGTTTAAGATAAAAGTTAGGATCAAAGTTCTTTCAGGTTTGGGTCAGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCAAACTGGGTGATATTGGACAAACACTTGAAAGATGAAAGGAAAAACTGTTTAGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTTTGAATTTGATGGAATCCCCTAAAATGAGTTCTAGAGAACCTTGGATATCACCACATGAATTAGGTGTTCCTCAGAAGTGTCTTAAAAGCTATTTTGACGAATCCTCCAATTTTAGGGCTCCTGATGTTACTCCTTTCAGTACTCCTGATGTAGACTCTCCTCTTACCGGAACTGATGCTGGAACATCTTCAATTTCGGGCTCGGATGTTGGCAGTTCATCTTTGTTCTCTGGATTTTGTGGCAGCTTGAGAAATGAATCTAGAACAGCAGCCGACGGAGGGAGGTTGTCTGGATCAGAATGTGATTCTGAGAGCGAAAAACGAACTCCCCCAGTTTCATATTTCCAGCGTTGTATGGTTGATGTTGTAAGTTCCAGGCGTAAATTCCAGCAACACACAATGGAAGAATCACAAAATGCTCGTCGTAGACCTCCAGCTTCGTTACATCAAGGTTCGGTCAAGAAAACGTCGTCTCTTTCTTTAGAACCTAGCAATGATGCGGTGAATCGAAATACCGATATTAGCTCGAGCAGAAACATAAGGAGCACGGTCTCATTATCTAGAAAAGCACCTCTAGGCCCTCCTCCTCTGTGTTCTATGTGTCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCTGAGCTTGAAGTTGCTACAAGTGGATTTGCACAAGCAAATTTTTTGGCTGAGGGTGGATATGGGTCTGTGCACCGAGGCGTCTTACCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCTAGTTCCCAGGGAGATCGGGAATTTTGTTCGGAAGTCGAGGTCTTAAGTTGTGCCCAACATCGGAACGTTGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTGCTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTTTATGGACGAAATCGTGATCCGCTGAAATGGTCTGCACGACAAAAGATTGCAGTCGGAGCTGCTCGAGGTTTGAGATACCTTCACGAAGAATGTAGAGTGGGTTGTATCGTGCACCGTGATATCCGCCCGAACAATATCCTCCTTACTCATGAATTCGAACCACTAGTCGGAGATTTTGGCCTGGCAAGGTGGCAGCCGGATGGCGACTTAGCAGTAGAAACCAGAATCCTTGGGAGATTTGGCTACCTAGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCTGACACGTACTCGTTTGGCGTTGTTTTGCTGGAACTCGTGACTGGACGCAAAGCAATCGATCTTAATCGTCCCAAGGGCCAGCAGTGCCTCACCGAATGGGCACGAAACCTGTTGCGAAAAAATGCAATCTCTGAACTGGTCGACCCATGCTTGATGAACTGCTACTCGGACGAGGAAGTTCGCCGGATGCTAAAATGTGCTTCCTTGTGCATCAAGCACAATCCGTATGTACGACCGCGCATGTCTCAGGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTATAA 2013 45.95 MEKGHLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQHGDRIKLLVVIPSQHSSKWMRGFSRLTSDCAIGHLRTAAGTLSDQKDDIVHSCSQMVHQLHGAYEPFKIKVRIKVLSGLGQGMVATEAKKAQSNWVILDKHLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKMSSREPWISPHELGVPQKCLKSYFDESSNFRAPDVTPFSTPDVDSPLTGTDAGTSSISGSDVGSSSLFSGFCGSLRNESRTAADGGRLSGSECDSESEKRTPPVSYFQRCMVDVVSSRRKFQQHTMEESQNARRRPPASLHQGSVKKTSSLSLEPSNDAVNRNTDISSSRNIRSTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQANFLAEGGYGSVHRGVLPDGQVVAVKQYKLASSQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHEFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKNAISELVDPCLMNCYSDEEVRRMLKCASLCIKHNPYVRPRMSQVLRVLEGDIVL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28883128 28887724 - Sed0005568.1 Sed12g1774 732730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1774 670 Gene3D Transferase(Phosphotransferase) domain 1 470 668 - -
Sed12g1774 670 SUPERFAMILY Protein kinase-like (PK-like) 375 664 IPR011009 -
Sed12g1774 670 MobiDBLite consensus disorder prediction 296 354 - -
Sed12g1774 670 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 470 670 - -
Sed12g1774 670 MobiDBLite consensus disorder prediction 254 275 - -
Sed12g1774 670 CDD STKc_IRAK 400 666 - -
Sed12g1774 670 MobiDBLite consensus disorder prediction 216 237 - -
Sed12g1774 670 PANTHER OS01G0750732 PROTEIN 278 665 IPR050885 -
Sed12g1774 670 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 366 469 - -
Sed12g1774 670 MobiDBLite consensus disorder prediction 317 353 - -
Sed12g1774 670 ProSitePatterns Tyrosine protein kinases specific active-site signature. 515 527 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1774 670 ProSiteProfiles Protein kinase domain profile. 394 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1774 670 Pfam Protein tyrosine and serine/threonine kinase 398 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1774 670 MobiDBLite consensus disorder prediction 209 237 - -
Sed12g1774 670 SMART tyrkin_6 394 664 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Sed12g1774 670 Gene3D Phosphorylase Kinase; domain 1 365 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2214 Sed-Chr6:45811306 Sed12g1774 Sed-Chr12:28883128 7.10E-220 dispersed
Sed07g2354 Sed-Chr7:39371120 Sed12g1774 Sed-Chr12:28883128 2.00E-71 dispersed
Sed12g1774 Sed-Chr12:28883128 Sed13g1683 Sed-Chr13:21839602 1.70E-140 dispersed
Sed12g1774 Sed-Chr12:28883128 Sed06g2213 Sed-Chr6:45811306 1.80E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80013 PF07714 PK_Tyr_Ser-Thr 1.80E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1774 - - - 0.0