Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1796 ATGATGATCGGCGAGCGCCACCGCCACAGTCCGGTGATTCACGTGACTCCATTGACGATACCGGAAGAGCCTCTTAACGAGATGAGGTTTTCTTTTCCTCTGAGTGGAATCGATTGCAATGCCAATGGCGGCGATTATTCTCCCTATTATCTTCAAGAAGCTTTAGCGGAAATACAGCGGTATTTTCCGGCGACGAACGAATCGGAGATTGAAGCGGAATCGGAGTTGTGCGGCCGAGAATCGGACGTTCCGGTTGATGCGTATTCTTGCGATCATTTTCGGATTTTCGAGTTCAAGGTGAGGAAGTGCACGCGAGGTCGATCTCACGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTTCGCATGGTGTGTTCGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAGGACGGGACGAACTGTAGACGACGAGTCTGTTTCTTCGCTCACACGCCTGAGCAACTGAGGATTTTGCCTCAGCAGAGTCCTCGGGGTGCGAATTCGCCGGATTCTTATGATGAATCTCCTCTGCGTAAGTCTATGGATGGATCTTATGTGAAATCGCATCCGTTTCTGTCGTCTCCGGTCTCGACGCCGGTGGATTCTCCCCCGTTGTCGCCGATGACTCGTTCGCTCAGCCGGTCTCTTGGCTCGGGTTCTATCAATGAAATGGTAGCATCTCTCCGGAATATGCATCTAAGCAAGGTTAAATCTCTACCGTCATCATGGAATGCTCAAATTGGATCTCCCGGTTATCCGGCTCGAATCCGCCCTGGGTTCTGTAGCCTTCCATCAACACCGACCCGGGCTCCGACCGGTGCTCGAGTCGGGCTGCTGGACTTCATGGACCATGAATTCCCGGAGGAGCCGGCAATGGAGCGAGTGGAATCGGGGAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAGAATTCTCTGGACCTGGCGGATTGTTCGAGCCCGGCGAACTGTACGCCGGACGTCGAATGGGTATCGGAGCTGGTGATGTGA 1131 53.93 MMIGERHRHSPVIHVTPLTIPEEPLNEMRFSFPLSGIDCNANGGDYSPYYLQEALAEIQRYFPATNESEIEAESELCGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGSCKKGDSCEFSHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRILPQQSPRGANSPDSYDESPLRKSMDGSYVKSHPFLSSPVSTPVDSPPLSPMTRSLSRSLGSGSINEMVASLRNMHLSKVKSLPSSWNAQIGSPGYPARIRPGFCSLPSTPTRAPTGARVGLLDFMDHEFPEEPAMERVESGRELRAKMLEKLSKENSLDLADCSSPANCTPDVEWVSELVM 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29019216 29020799 + Sed0001184.1 Sed12g1796 732752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1796 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 157 IPR000571 GO:0046872(InterPro)
Sed12g1796 376 Gene3D - 127 200 - -
Sed12g1796 376 MobiDBLite consensus disorder prediction 228 253 - -
Sed12g1796 376 Pfam RNA-binding, Nab2-type zinc finger 172 188 - -
Sed12g1796 376 PANTHER UNKEMPT FAMILY MEMBER 51 375 IPR045234 -
Sed12g1796 376 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Sed12g1796 376 MobiDBLite consensus disorder prediction 195 253 - -
Sed12g1796 376 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872(InterPro)
Sed12g1796 376 SMART c3hfinal6 167 190 IPR000571 GO:0046872(InterPro)
Sed12g1796 376 SMART c3hfinal6 132 158 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3374 Sed-Chr4:43754042 Sed12g1796 Sed-Chr12:29019216 6.40E-57 dispersed
Sed05g1938 Sed-Chr5:32757663 Sed12g1796 Sed-Chr12:29019216 2.00E-58 dispersed
Sed07g1240 Sed-Chr7:9231562 Sed12g1796 Sed-Chr12:29019216 8.40E-43 dispersed
Sed11g0026 Sed-Chr11:181821 Sed12g1796 Sed-Chr12:29019216 2.10E-97 dispersed
Sed11g0899 Sed-Chr11:21783224 Sed12g1796 Sed-Chr12:29019216 3.10E-57 dispersed
Sed12g1226 Sed-Chr12:8602749 Sed12g1796 Sed-Chr12:29019216 1.00E-50 dispersed
Sed12g1796 Sed-Chr12:29019216 Sed13g0275 Sed-Chr13:1917940 1.70E-44 dispersed
Sed12g1796 Sed-Chr12:29019216 Sed13g1846 Sed-Chr13:23420974 1.60E-71 wgd
Sed12g1796 Sed-Chr12:29019216 Sed03g1772 Sed-Chr3:11706287 2.30E-102 wgd
Sed12g1796 Sed-Chr12:29019216 Sed08g0848 Sed-Chr8:6886229 2.60E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40243 PF00642 zf-CCCH 6.80E-06 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1796 - - - 0.0