Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1796 | ATGATGATCGGCGAGCGCCACCGCCACAGTCCGGTGATTCACGTGACTCCATTGACGATACCGGAAGAGCCTCTTAACGAGATGAGGTTTTCTTTTCCTCTGAGTGGAATCGATTGCAATGCCAATGGCGGCGATTATTCTCCCTATTATCTTCAAGAAGCTTTAGCGGAAATACAGCGGTATTTTCCGGCGACGAACGAATCGGAGATTGAAGCGGAATCGGAGTTGTGCGGCCGAGAATCGGACGTTCCGGTTGATGCGTATTCTTGCGATCATTTTCGGATTTTCGAGTTCAAGGTGAGGAAGTGCACGCGAGGTCGATCTCACGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTTCGCATGGTGTGTTCGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAGGACGGGACGAACTGTAGACGACGAGTCTGTTTCTTCGCTCACACGCCTGAGCAACTGAGGATTTTGCCTCAGCAGAGTCCTCGGGGTGCGAATTCGCCGGATTCTTATGATGAATCTCCTCTGCGTAAGTCTATGGATGGATCTTATGTGAAATCGCATCCGTTTCTGTCGTCTCCGGTCTCGACGCCGGTGGATTCTCCCCCGTTGTCGCCGATGACTCGTTCGCTCAGCCGGTCTCTTGGCTCGGGTTCTATCAATGAAATGGTAGCATCTCTCCGGAATATGCATCTAAGCAAGGTTAAATCTCTACCGTCATCATGGAATGCTCAAATTGGATCTCCCGGTTATCCGGCTCGAATCCGCCCTGGGTTCTGTAGCCTTCCATCAACACCGACCCGGGCTCCGACCGGTGCTCGAGTCGGGCTGCTGGACTTCATGGACCATGAATTCCCGGAGGAGCCGGCAATGGAGCGAGTGGAATCGGGGAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAGAATTCTCTGGACCTGGCGGATTGTTCGAGCCCGGCGAACTGTACGCCGGACGTCGAATGGGTATCGGAGCTGGTGATGTGA | 1131 | 53.93 | MMIGERHRHSPVIHVTPLTIPEEPLNEMRFSFPLSGIDCNANGGDYSPYYLQEALAEIQRYFPATNESEIEAESELCGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGSCKKGDSCEFSHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRILPQQSPRGANSPDSYDESPLRKSMDGSYVKSHPFLSSPVSTPVDSPPLSPMTRSLSRSLGSGSINEMVASLRNMHLSKVKSLPSSWNAQIGSPGYPARIRPGFCSLPSTPTRAPTGARVGLLDFMDHEFPEEPAMERVESGRELRAKMLEKLSKENSLDLADCSSPANCTPDVEWVSELVM | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 29019216 | 29020799 | + | Sed0001184.1 | Sed12g1796 | 732752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1796 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 157 | IPR000571 | GO:0046872(InterPro) | |
Sed12g1796 | 376 | Gene3D | - | 127 | 200 | - | - | |
Sed12g1796 | 376 | MobiDBLite | consensus disorder prediction | 228 | 253 | - | - | |
Sed12g1796 | 376 | Pfam | RNA-binding, Nab2-type zinc finger | 172 | 188 | - | - | |
Sed12g1796 | 376 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 375 | IPR045234 | - | |
Sed12g1796 | 376 | FunFam | Zinc finger CCCH domain-containing protein 66 | 90 | 158 | - | - | |
Sed12g1796 | 376 | MobiDBLite | consensus disorder prediction | 195 | 253 | - | - | |
Sed12g1796 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 159 | IPR000571 | GO:0046872(InterPro) | |
Sed12g1796 | 376 | SMART | c3hfinal6 | 167 | 190 | IPR000571 | GO:0046872(InterPro) | |
Sed12g1796 | 376 | SMART | c3hfinal6 | 132 | 158 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3374 | Sed-Chr4:43754042 | Sed12g1796 | Sed-Chr12:29019216 | 6.40E-57 | dispersed | |
Sed05g1938 | Sed-Chr5:32757663 | Sed12g1796 | Sed-Chr12:29019216 | 2.00E-58 | dispersed | |
Sed07g1240 | Sed-Chr7:9231562 | Sed12g1796 | Sed-Chr12:29019216 | 8.40E-43 | dispersed | |
Sed11g0026 | Sed-Chr11:181821 | Sed12g1796 | Sed-Chr12:29019216 | 2.10E-97 | dispersed | |
Sed11g0899 | Sed-Chr11:21783224 | Sed12g1796 | Sed-Chr12:29019216 | 3.10E-57 | dispersed | |
Sed12g1226 | Sed-Chr12:8602749 | Sed12g1796 | Sed-Chr12:29019216 | 1.00E-50 | dispersed | |
Sed12g1796 | Sed-Chr12:29019216 | Sed13g0275 | Sed-Chr13:1917940 | 1.70E-44 | dispersed | |
Sed12g1796 | Sed-Chr12:29019216 | Sed13g1846 | Sed-Chr13:23420974 | 1.60E-71 | wgd | |
Sed12g1796 | Sed-Chr12:29019216 | Sed03g1772 | Sed-Chr3:11706287 | 2.30E-102 | wgd | |
Sed12g1796 | Sed-Chr12:29019216 | Sed08g0848 | Sed-Chr8:6886229 | 2.60E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40243 | PF00642 | zf-CCCH | 6.80E-06 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1796 | - | - | - | 0.0 |