Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1811 ATGTCAAATCTTAATCCCCACTTTGTTGTTTCTCTTCTTCTTCTCCTCTTGCTCACCCAAACCCATTGCCACACCAAAGGAATCAGACCCAAGAAATTTCCCAAAACCATCCTTCCCAAAAATTCTACCAAAACCCAATTCTCAGAACAGCAATTCATGAAATGGGTCAAATTTGTTGGCAGCCTTAGACACTCTGTTTTCAGAACCGCCAAGAACAAGCTTTTCCCTTCGTACACGCTCCACGTGGACAGAAACCCCGCCGCCGGCGACTTCACGTCGGTCCAAGACGCCGTCGATTCTCTCCCCTTCATAAATTTGATCAGAGTCGTAATCAAGGTTCATGCAGGCGTTTACAAAGAAAAAGTAAACATACCGCCGTTTAAATCGTTCATAACAATCGAAGGAGCAGGAGCAGACAAAACGATCATTCAATGGGGGGACACGGCACAAACGCCGGGCCAAAAGGGGCAGCCAATGGGGACATACAATTCCGCAACATTTGCAGTAAATTCGCCTTATTTCATAGCCAAAAACATCACATTCAAGAACACCACCCCTGTTCCGGCACCGGGAGCCATCGGAAAACAGGCAGTGGCGTTCAGAATCTCCGGCGACACGGCGGCGTTCTACGGCTGTAGATTCTTGGGAGCTCAAGACACGTTGTATGATCATTTGGGTCGCCATTATTACAAGGATTGTTACATTGAAGGGTCCGTGGATTTCATATTTGGAAATGGTTTGTCTCTGTTTGAGGTAAGAAAAGAGTGTGGCTTTGTGTGTGACAAATACTACCAAATTACCAATTTCGAGTTAAGCCCTCCTTAG 825 46.18 MSNLNPHFVVSLLLLLLLTQTHCHTKGIRPKKFPKTILPKNSTKTQFSEQQFMKWVKFVGSLRHSVFRTAKNKLFPSYTLHVDRNPAAGDFTSVQDAVDSLPFINLIRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIIQWGDTAQTPGQKGQPMGTYNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISGDTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEVRKECGFVCDKYYQITNFELSPP 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29193164 29194830 + Sed0012672.2 Sed12g1811 732767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1811 274 Gene3D - 25 263 IPR012334 -
Sed12g1811 274 ProSitePatterns Pectinesterase signature 2. 235 244 IPR033131 -
Sed12g1811 274 Pfam Pectinesterase 88 251 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed12g1811 274 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 251 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed12g1811 274 SUPERFAMILY Pectin lyase-like 75 251 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1811 Sed-Chr12:29193164 Sed13g1010 Sed-Chr13:8136943 2.50E-74 dispersed
Sed12g1810 Sed-Chr12:29193164 Sed12g1811 Sed-Chr12:29193164 6.40E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1811 K01051 - csv:101215894 449.514