Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1816 ATGATGACGTCATCTCCTTCTTCAATCCTCTGTTTTCTGCAACCCATTTCCTTCTTCCTGTTCCTCCTCTGTTTCCACCATGCCAATTCCCAGCTCTACAACCAAGAACACTCTGTTCTTCTCCGGTTGAACCGGTTCTGGAAAAACCAAGCTCCGATCCGCCACTGGCCCACTTCCAATTCTTCCCACTGTGCATGGCCGGAGGTTCAGTGCACCAACAACTCTGTCACTGCTCTGTTTTTTACTAAGTACAACTTGAACGGGACTATCCCCCCTTTCATTTGCGATCTCAGCAATCTTGCCCATCTTGATCTTCAGCTCAATTTAATCACCGGCGGCTTTCCCACCGCTCTTTATGACTGTTCCAAGCTTGATTACCTCAACCTCGAACTGAATGCCCTCTTCGGCCCCATCCCCGATGACATCGACCGCCTTTCCCGCCTCCGCTTTCTTAACCTCGGCAGCAACAGCCTCTCCGGCGAAATTCCGGTCTCTATTTCTCGGTTGTCGGAGCTCCGATCACTTGGGCTTTATGGGAATCAACTCCATGGGACTTACCCATCTGAAATGGGCAGCTTGTCGAATCTGGAAGACTTGATGATGGCTTATAATTCGAATCTGCAACCGGCTGGATTGCCCTCGAGTTTTGCTCAATTGAAGAAATTGAAGTATGTGTGGTTGGCAGGGACGAACTTAACCGGTGAAATTCCTGATTGGATCGGAAATTGGACGGCCCTCGAGAAATTGGATTTGTCGATAAACAGGTTGATTGGGAAAATTCCTAACAGTTTGTTTACGTTGAAGAATCTTAGTATTGTTTATCTGTACAAGAACAATCTTTCAGGAGAAATTCCGACTCAGATTGATTCAAAAAATATTGCCGAATACGACTTGTCGGAAAATGATTTGACAGGCCAAATACCGGCAGCGATCGGCGATCTTCAGAAATTGGGTGCTCTGCTTCTGTTTACAAATCGATTACATGGAGAAATCCCAGAAGGGATTGGCCGTCTTCCATTGTTAAATGACGTCAGATTGTTCGACAACAGTTTAACCGGCGAAATTCCGCCGGATTTAGGCCGGAATTTGGTTCTCTATAGATTGGAGATCAACAATAACAAGCTCACCGGAAGCTTGCCGGAGCATTTGTGCTCCGGCGGTAAGCTCGTCGGAGTTACTGCTTTCAACAATAATCTCAGTGGGGAACTGCCAGATTCGCTTGGGAATTGCGATAGCTTGATGATGATTGAAGTTCATCGGAACAACCTTTCCGGGAAGATTCCGGCCGGTTTATGGACGGGTCTGAATTTGACTTACGTATCGTTGAGCGACAATTCTTTCACCGGTGAACTCCCAGAGAGATTCTCGAAGAAAATTGAGCGATTGGAAATCAATAACAACAAATTTTCAGGGGAAATCCCATCTGGGTTATCTTCATTGTGGAATTTGACCGAGTTTGAAGCTAGCAATAATTTGTTGACAGGACAAATTCCTGAAGAAATCACAGCTCTTTCGAAGTTGACCAAGCTTTTGCTTGATGGAAATCAACTCAATGGTGAGCTTCCACGGAAAATCATTTCTTGGAAATCATTGAACAATCTTAACCTTAGTCGGAATCATCTTTTCGGTGAAATTCCCGACGAGTTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCTGAGAATCAACTTTCCGGGTCGATTCCGATCCAACTCGGAAGTTTGAATCTGAATTTTCTCAACCTTTCTTCAAATCACCTTTCTGGGTCAATTCCATTTAGATTTGAAAACTCAATCTTTGCAAGAAGCTTTTTGAACAATCCAAATCTGTGTTCAAACAACGCAGTTCTAAGTTTGAACAGCTGCAGTTTGAGAAAACAGGATTCTAGAAAGATTTCATCAAAGCATCTTGCTCTGATTGTCAGCTTGGGCATCATATTGTTCATACTATTTGTACTTTCTGGTTTGTACATAATCAAAATCTACAGAAAGAATGGACACAGAGCAGATGTTGAATGGAAACTGATCTCATTTCAGAGGCTCGGTTTCTCGGAAGCAAATCTTGTATCAGGGCTATCAGAGAACAACGAAATTGGAAGCGGCGGATCTGGAAAAGTTTACCGGATCTCGGTGAACGATTTGGGCGATAAAGTCGCCGTGAAGAAGATATGGAGCAACAGGAAGTCGGACCACAAGCTCGAGAAAGAATTCATGGCAGAAGTGAAGATCCTCAGCTCAATTAGGCATAACAACATAATCAAACTCCTCTGCTGTGTTTCCTGCGATACATCACGGCTTCTCGTTTACGAGTACATGGAGAGGCAAAGCCTGGACAAATGGCTGCACAAGAGGAGCTCGACGCCGAGAATTACAGGGTCGGAGCCTGTTCTCGGTGTCGCCCTCGATTGGCCAAAGAGATTTCATATTGCCATGGGGACTGCACAAGGTCTCTATTACATGCACCATGAATGCTCACCTCCAGTAATTCACAGAGACTTGAAATCCAGCAATATTTTACTTGATTCAGAATTCAATGCCAAAATAGCAGATTTTGGCTTAGCTAAGTTGCTGGTAAAACAGGGAGAATCAGCTTCAGTCTCGGCCGTGGCTGGTTCTTTTGGATACATAGCTCCAGAGTATGCTCAGACACCAAGAATTAACGAGAAGACCGATGTATTTAGCTTCGGGGTTGTTCTTTTGGAGTTGGCAACCGGAAAGGATGCTCTCAACAGTGACGAAGACTCATCCCTGGCCGAGTGGGCTTGGCAGTACATTCAACAAGGCAAGCAAATAGCTGATGCATTGGATGAGGATGTGAAGGAGCCACAGTATCTTCATGAGATGTGCAGTGTTTTCAAACTTGGAGTGATCTGCACTTCCCGTTTGCCCACCAACCGGCCAGCCATGAACCAGGCTCTGGAAATCTTAATCCGCAGCCGAGCCTCAACACCCCAAAACCATGGAAATAAGAAACTCAGCTCGTGA 2988 45.08 MMTSSPSSILCFLQPISFFLFLLCFHHANSQLYNQEHSVLLRLNRFWKNQAPIRHWPTSNSSHCAWPEVQCTNNSVTALFFTKYNLNGTIPPFICDLSNLAHLDLQLNLITGGFPTALYDCSKLDYLNLELNALFGPIPDDIDRLSRLRFLNLGSNSLSGEIPVSISRLSELRSLGLYGNQLHGTYPSEMGSLSNLEDLMMAYNSNLQPAGLPSSFAQLKKLKYVWLAGTNLTGEIPDWIGNWTALEKLDLSINRLIGKIPNSLFTLKNLSIVYLYKNNLSGEIPTQIDSKNIAEYDLSENDLTGQIPAAIGDLQKLGALLLFTNRLHGEIPEGIGRLPLLNDVRLFDNSLTGEIPPDLGRNLVLYRLEINNNKLTGSLPEHLCSGGKLVGVTAFNNNLSGELPDSLGNCDSLMMIEVHRNNLSGKIPAGLWTGLNLTYVSLSDNSFTGELPERFSKKIERLEINNNKFSGEIPSGLSSLWNLTEFEASNNLLTGQIPEEITALSKLTKLLLDGNQLNGELPRKIISWKSLNNLNLSRNHLFGEIPDEFGGLPSLTDLDLSENQLSGSIPIQLGSLNLNFLNLSSNHLSGSIPFRFENSIFARSFLNNPNLCSNNAVLSLNSCSLRKQDSRKISSKHLALIVSLGIILFILFVLSGLYIIKIYRKNGHRADVEWKLISFQRLGFSEANLVSGLSENNEIGSGGSGKVYRISVNDLGDKVAVKKIWSNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCDTSRLLVYEYMERQSLDKWLHKRSSTPRITGSEPVLGVALDWPKRFHIAMGTAQGLYYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGESASVSAVAGSFGYIAPEYAQTPRINEKTDVFSFGVVLLELATGKDALNSDEDSSLAEWAWQYIQQGKQIADALDEDVKEPQYLHEMCSVFKLGVICTSRLPTNRPAMNQALEILIRSRASTPQNHGNKKLSS 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29364425 29367501 - Sed0023551.1 Sed12g1816 732772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1816 995 Gene3D Ribonuclease Inhibitor 498 624 IPR032675 -
Sed12g1816 995 Pfam Leucine rich repeat 530 588 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 Gene3D Ribonuclease Inhibitor 388 497 IPR032675 -
Sed12g1816 995 ProSitePatterns Protein kinases ATP-binding region signature. 699 723 IPR017441 GO:0005524(InterPro)
Sed12g1816 995 SMART serkin_6 693 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1816 995 Pfam Protein kinase domain 695 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1816 995 Gene3D Transferase(Phosphotransferase) domain 1 773 993 - -
Sed12g1816 995 Gene3D Ribonuclease Inhibitor 35 143 IPR032675 -
Sed12g1816 995 FunFam Receptor-like protein kinase HSL1 673 772 - -
Sed12g1816 995 ProSiteProfiles Protein kinase domain profile. 693 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1816 995 Gene3D Ribonuclease Inhibitor 208 387 IPR032675 -
Sed12g1816 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 190 - -
Sed12g1816 995 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 Pfam Leucine Rich Repeat 459 480 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 Pfam Leucine Rich Repeat 436 456 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Sed12g1816 995 SUPERFAMILY RNI-like 260 616 - -
Sed12g1816 995 Gene3D Ribonuclease Inhibitor 144 207 IPR032675 -
Sed12g1816 995 SMART LRR_typ_2 338 362 IPR003591 -
Sed12g1816 995 SMART LRR_typ_2 97 121 IPR003591 -
Sed12g1816 995 SMART LRR_typ_2 504 528 IPR003591 -
Sed12g1816 995 SMART LRR_typ_2 145 169 IPR003591 -
Sed12g1816 995 SMART LRR_typ_2 243 267 IPR003591 -
Sed12g1816 995 SMART LRR_typ_2 552 576 IPR003591 -
Sed12g1816 995 Gene3D Phosphorylase Kinase; domain 1 676 772 - -
Sed12g1816 995 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 284 - -
Sed12g1816 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 978 IPR050647 -
Sed12g1816 995 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 625 - -
Sed12g1816 995 SUPERFAMILY L domain-like 46 378 - -
Sed12g1816 995 SUPERFAMILY Protein kinase-like (PK-like) 688 977 IPR011009 -
Sed12g1816 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 773 994 - -
Sed12g1816 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1250 Sed-Chr1:9305135 Sed12g1816 Sed-Chr12:29364425 1.10E-122 dispersed
Sed12g1816 Sed-Chr12:29364425 Sed14g0971 Sed-Chr14:18940819 4.90E-59 dispersed
Sed12g1816 Sed-Chr12:29364425 Sed14g1490 Sed-Chr14:23242860 4.10E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80016 PF00069 Pkinase 2.20E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1816 - - - 0.0