Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1818 ATGGACGCTTGGTTCACAGCTCTAGCTGTACTCACCATTTGCGCAATCCTAAACTTCCTTCTCACACATTTCTTCTCCGGCAAGAAATCAAACCTCCCACCCGGCCCCTTGGCTCTGCCTCTGATCGGCAACCCGATCTGGCTCTTCAAATCCCTCTCCGATCTCGAACCTGTCCTCCGCCGCTACCATTCCCAATACGGTCCAATCCTCACCGTCCGCTTCCTCGGTAACGCCCCCTCCATCTTCATCTCCGGCCACTCCGCTTCCCACCACGCTCTCGTTATCAATGGCGCCGTCTTCGCTGACCGCTTCCCTGTCGGGGAAACCGCCAAGATCATCACTAGCAATCAACACAACATCAGCACTGCCTTCTACGGCCATACCTGGCGTGTCCTCCGACGTAACCTCACCGCGGAGCTCCTCCACCCTTCTCGCTTGAAAGCTCACTCTAGTTCTCGTAAATGGGCTTTGGATGAACTATGTCATTCCCTTATTAAACATGCCCCGACCCCGGTTAAGCTCATCGATCACCTACGCCGCGCCATGTTCAACCTCGCTGCAGCTATGTGTTTCGGGGAGAGATTTGATGAGAAATTCATCAAGGAAATTGAAGAGTCCCAACGTGGGGTTTTGTTGAATATTGGTAAATTTACTGATCTTAACTTCTGGCCGGTGAAATTGGGGAAGATTCTGTTTCGGAAGAGATGGGAAGAGATTTATCAGCTACGTAAACGACAAAACGATCTGTTATTACCGTTGATCAATGCAAGAAAAGGGATCATTACCAATAAAAATGAAATTAGCGCAATCCCGTACGTGGACACTCTATTTGATCTCGAAATTGCCGTCGACAACGACGACGAGAAGAAACGGAGAAATTTGGTGGAAGATGAGCTCGTAACATTATGCTCGGAGTTTCTCGACGCGATAACGGATACGACAGTGACGTCAATGCAATGGATAATGGCAAATTTGGTAAAACACCCAGAAATTCAAGAGAAATTGTATGAGGAAATCAAACAAGTAATGGGAGAAAGGGACGAAATCGAGGAGGAAGATATACAGAGGGTGTTGTATTTGAAAGCGATAGTAATGGAGGGGCTGCGGCTGCACCCGCCGGGGCATTTGTTGTTGCCACACAAAGTGGCGGAGGACACTGAATTGGAGGGGTACAAGATACCGAAAGGGACGTCGGTGAATTTCATGGTTGCGGACATGGGTTGGGACCCGAAGGTGTGGGCGAACCCAACCACATTTGAGCCGGGGAGGTTTATAACGACCACGGTGGGGGAGGTGGAGTTGGATGTGGATATTACGGGTAGTAAGGAGATAAAGATGATGCCGTTCGGGGCAGGGAGGAGGATCTGCCCGGGGTTTGCATTGGGGTTGCTTCATTTGGAGTATTTTGTTGGGAATTTGGTTTGGAAGTTTAGGTGGACGGCTGTTGGAGATGTGGACTTGTCGGAGAAACAAGAGTCGTCGGTTACTATGAAACATTCTCTGCTTTGTTGCTTGTCTCCCAGGAGGGATTCTGTTTCTTGTTAA 1545 49.39 MDAWFTALAVLTICAILNFLLTHFFSGKKSNLPPGPLALPLIGNPIWLFKSLSDLEPVLRRYHSQYGPILTVRFLGNAPSIFISGHSASHHALVINGAVFADRFPVGETAKIITSNQHNISTAFYGHTWRVLRRNLTAELLHPSRLKAHSSSRKWALDELCHSLIKHAPTPVKLIDHLRRAMFNLAAAMCFGERFDEKFIKEIEESQRGVLLNIGKFTDLNFWPVKLGKILFRKRWEEIYQLRKRQNDLLLPLINARKGIITNKNEISAIPYVDTLFDLEIAVDNDDEKKRRNLVEDELVTLCSEFLDAITDTTVTSMQWIMANLVKHPEIQEKLYEEIKQVMGERDEIEEEDIQRVLYLKAIVMEGLRLHPPGHLLLPHKVAEDTELEGYKIPKGTSVNFMVADMGWDPKVWANPTTFEPGRFITTTVGEVELDVDITGSKEIKMMPFGAGRRICPGFALGLLHLEYFVGNLVWKFRWTAVGDVDLSEKQESSVTMKHSLLCCLSPRRDSVSC 514
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 29404566 29406545 - Sed0025845.1 Sed12g1818 732774
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1818 514 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 Coils Coil 332 352 - -
Sed12g1818 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed12g1818 514 Pfam Cytochrome P450 33 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 Gene3D Cytochrome P450 26 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 FunFam Cytochrome P450 family protein 26 510 - -
Sed12g1818 514 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 15 507 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
Sed12g1818 514 CDD CYP77_89 65 501 - -
Sed12g1818 514 SUPERFAMILY Cytochrome P450 25 508 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g1818 514 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0370 Sed-Chr1:2821828 Sed12g1818 Sed-Chr12:29404566 1.70E-151 dispersed
Sed05g3693 Sed-Chr5:44989251 Sed12g1818 Sed-Chr12:29404566 1.60E-77 dispersed
Sed05g3709 Sed-Chr5:45105012 Sed12g1818 Sed-Chr12:29404566 4.00E-113 dispersed
Sed10g0618 Sed-Chr10:4117234 Sed12g1818 Sed-Chr12:29404566 4.60E-77 dispersed
Sed12g1818 Sed-Chr12:29404566 Sed02g0797 Sed-Chr2:45657983 1.10E-51 dispersed
Sed12g1818 Sed-Chr12:29404566 Sed01g0369 Sed-Chr1:2816392 9.40E-147 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1818 K24184 - csv:101204774 703.745