Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g1818 | ATGGACGCTTGGTTCACAGCTCTAGCTGTACTCACCATTTGCGCAATCCTAAACTTCCTTCTCACACATTTCTTCTCCGGCAAGAAATCAAACCTCCCACCCGGCCCCTTGGCTCTGCCTCTGATCGGCAACCCGATCTGGCTCTTCAAATCCCTCTCCGATCTCGAACCTGTCCTCCGCCGCTACCATTCCCAATACGGTCCAATCCTCACCGTCCGCTTCCTCGGTAACGCCCCCTCCATCTTCATCTCCGGCCACTCCGCTTCCCACCACGCTCTCGTTATCAATGGCGCCGTCTTCGCTGACCGCTTCCCTGTCGGGGAAACCGCCAAGATCATCACTAGCAATCAACACAACATCAGCACTGCCTTCTACGGCCATACCTGGCGTGTCCTCCGACGTAACCTCACCGCGGAGCTCCTCCACCCTTCTCGCTTGAAAGCTCACTCTAGTTCTCGTAAATGGGCTTTGGATGAACTATGTCATTCCCTTATTAAACATGCCCCGACCCCGGTTAAGCTCATCGATCACCTACGCCGCGCCATGTTCAACCTCGCTGCAGCTATGTGTTTCGGGGAGAGATTTGATGAGAAATTCATCAAGGAAATTGAAGAGTCCCAACGTGGGGTTTTGTTGAATATTGGTAAATTTACTGATCTTAACTTCTGGCCGGTGAAATTGGGGAAGATTCTGTTTCGGAAGAGATGGGAAGAGATTTATCAGCTACGTAAACGACAAAACGATCTGTTATTACCGTTGATCAATGCAAGAAAAGGGATCATTACCAATAAAAATGAAATTAGCGCAATCCCGTACGTGGACACTCTATTTGATCTCGAAATTGCCGTCGACAACGACGACGAGAAGAAACGGAGAAATTTGGTGGAAGATGAGCTCGTAACATTATGCTCGGAGTTTCTCGACGCGATAACGGATACGACAGTGACGTCAATGCAATGGATAATGGCAAATTTGGTAAAACACCCAGAAATTCAAGAGAAATTGTATGAGGAAATCAAACAAGTAATGGGAGAAAGGGACGAAATCGAGGAGGAAGATATACAGAGGGTGTTGTATTTGAAAGCGATAGTAATGGAGGGGCTGCGGCTGCACCCGCCGGGGCATTTGTTGTTGCCACACAAAGTGGCGGAGGACACTGAATTGGAGGGGTACAAGATACCGAAAGGGACGTCGGTGAATTTCATGGTTGCGGACATGGGTTGGGACCCGAAGGTGTGGGCGAACCCAACCACATTTGAGCCGGGGAGGTTTATAACGACCACGGTGGGGGAGGTGGAGTTGGATGTGGATATTACGGGTAGTAAGGAGATAAAGATGATGCCGTTCGGGGCAGGGAGGAGGATCTGCCCGGGGTTTGCATTGGGGTTGCTTCATTTGGAGTATTTTGTTGGGAATTTGGTTTGGAAGTTTAGGTGGACGGCTGTTGGAGATGTGGACTTGTCGGAGAAACAAGAGTCGTCGGTTACTATGAAACATTCTCTGCTTTGTTGCTTGTCTCCCAGGAGGGATTCTGTTTCTTGTTAA | 1545 | 49.39 | MDAWFTALAVLTICAILNFLLTHFFSGKKSNLPPGPLALPLIGNPIWLFKSLSDLEPVLRRYHSQYGPILTVRFLGNAPSIFISGHSASHHALVINGAVFADRFPVGETAKIITSNQHNISTAFYGHTWRVLRRNLTAELLHPSRLKAHSSSRKWALDELCHSLIKHAPTPVKLIDHLRRAMFNLAAAMCFGERFDEKFIKEIEESQRGVLLNIGKFTDLNFWPVKLGKILFRKRWEEIYQLRKRQNDLLLPLINARKGIITNKNEISAIPYVDTLFDLEIAVDNDDEKKRRNLVEDELVTLCSEFLDAITDTTVTSMQWIMANLVKHPEIQEKLYEEIKQVMGERDEIEEEDIQRVLYLKAIVMEGLRLHPPGHLLLPHKVAEDTELEGYKIPKGTSVNFMVADMGWDPKVWANPTTFEPGRFITTTVGEVELDVDITGSKEIKMMPFGAGRRICPGFALGLLHLEYFVGNLVWKFRWTAVGDVDLSEKQESSVTMKHSLLCCLSPRRDSVSC | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 29404566 | 29406545 | - | Sed0025845.1 | Sed12g1818 | 732774 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g1818 | 514 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | Coils | Coil | 332 | 352 | - | - | |
| Sed12g1818 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed12g1818 | 514 | Pfam | Cytochrome P450 | 33 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | Gene3D | Cytochrome P450 | 26 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | FunFam | Cytochrome P450 family protein | 26 | 510 | - | - | |
| Sed12g1818 | 514 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 15 | 507 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Sed12g1818 | 514 | CDD | CYP77_89 | 65 | 501 | - | - | |
| Sed12g1818 | 514 | SUPERFAMILY | Cytochrome P450 | 25 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 402 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 63 | 82 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1818 | 514 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0370 | Sed-Chr1:2821828 | Sed12g1818 | Sed-Chr12:29404566 | 1.70E-151 | dispersed | |
| Sed05g3693 | Sed-Chr5:44989251 | Sed12g1818 | Sed-Chr12:29404566 | 1.60E-77 | dispersed | |
| Sed05g3709 | Sed-Chr5:45105012 | Sed12g1818 | Sed-Chr12:29404566 | 4.00E-113 | dispersed | |
| Sed10g0618 | Sed-Chr10:4117234 | Sed12g1818 | Sed-Chr12:29404566 | 4.60E-77 | dispersed | |
| Sed12g1818 | Sed-Chr12:29404566 | Sed02g0797 | Sed-Chr2:45657983 | 1.10E-51 | dispersed | |
| Sed12g1818 | Sed-Chr12:29404566 | Sed01g0369 | Sed-Chr1:2816392 | 9.40E-147 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g1818 | K24184 | - | csv:101204774 | 703.745 |